Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SVA_RS16335 Genome accession   NZ_AP014936
Coordinates   3379268..3379723 (-) Length   151 a.a.
NCBI ID   WP_096462231.1    Uniprot ID   -
Organism   Sulfurifustis variabilis strain skN76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3374268..3384723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SVA_RS16300 (SVA_3323) nudB 3374383..3374835 (-) 453 WP_096462224.1 dihydroneopterin triphosphate diphosphatase -
  SVA_RS16305 (SVA_3324) aspS 3374810..3376612 (-) 1803 WP_096462225.1 aspartate--tRNA ligase -
  SVA_RS16310 (SVA_3325) - 3376655..3377299 (-) 645 WP_096462226.1 DUF502 domain-containing protein -
  SVA_RS16315 (SVA_3326) - 3377301..3377591 (-) 291 WP_096462227.1 FmdB family zinc ribbon protein -
  SVA_RS16320 (SVA_3327) - 3377944..3378258 (+) 315 WP_096462228.1 HU family DNA-binding protein -
  SVA_RS16325 (SVA_3328) - 3378380..3378700 (-) 321 WP_096462229.1 DUF6763 family protein -
  SVA_RS16330 (SVA_3329) - 3378850..3379197 (+) 348 WP_096462230.1 histidine triad nucleotide-binding protein -
  SVA_RS16335 (SVA_3330) ssb 3379268..3379723 (-) 456 WP_096462231.1 single-stranded DNA-binding protein Machinery gene
  SVA_RS16340 (SVA_3331) - 3379860..3381236 (-) 1377 WP_096462232.1 MFS transporter -
  SVA_RS16345 (SVA_3332) uvrA 3381350..3384208 (+) 2859 WP_096462233.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16507.30 Da        Isoelectric Point: 5.3273

>NTDB_id=67434 SVA_RS16335 WP_096462231.1 3379268..3379723(-) (ssb) [Sulfurifustis variabilis strain skN76]
MARGVNKVILVGNLGRDPEVRYSPNGQAIANVTIATTDSWKDKNTGEKQERTEWHRVVFFGRLAEIAGEYLKKGSQIYVE
GRLQTRKWQDKDGNERYTTEIVANEMQMLGSRGGAGAPSEATESTAGYEAAPARAGGAKSAPPDFDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=67434 SVA_RS16335 WP_096462231.1 3379268..3379723(-) (ssb) [Sulfurifustis variabilis strain skN76]
ATGGCACGCGGCGTCAACAAGGTGATACTCGTCGGTAACCTCGGCCGGGACCCGGAGGTGCGGTACTCACCGAACGGCCA
GGCGATCGCCAACGTCACGATTGCGACGACCGATTCGTGGAAGGACAAGAACACCGGCGAGAAGCAGGAGCGAACGGAAT
GGCATCGGGTCGTGTTCTTCGGCCGACTGGCCGAAATCGCGGGGGAGTACCTGAAAAAGGGCTCACAGATCTATGTCGAG
GGGCGCCTGCAGACGCGCAAGTGGCAGGACAAGGACGGCAACGAACGCTACACGACCGAGATCGTCGCGAATGAAATGCA
GATGCTCGGTTCCCGTGGCGGTGCCGGCGCGCCGAGCGAGGCGACCGAATCGACCGCCGGCTACGAGGCGGCGCCGGCAC
GGGCCGGCGGTGCGAAGAGCGCGCCCCCCGACTTCGACGACGACATTCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52

100

0.603
  ssb Glaesserella parasuis strain SC1401

48.876

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.57
  ssb Neisseria meningitidis MC58

48.555

100

0.556

Multiple sequence alignment