Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SVA_RS15055 Genome accession   NZ_AP014936
Coordinates   3119485..3119943 (-) Length   152 a.a.
NCBI ID   WP_420823889.1    Uniprot ID   -
Organism   Sulfurifustis variabilis strain skN76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3090200..3119943 3119485..3119943 within 0


Gene organization within MGE regions


Location: 3090200..3119943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SVA_RS14910 (SVA_3038) - 3090200..3091039 (-) 840 WP_148665505.1 IS3 family transposase -
  SVA_RS14915 (SVA_3039) - 3091036..3091365 (-) 330 WP_096461977.1 transposase -
  SVA_RS20220 (SVA_3040) - 3091420..3091965 (-) 546 WP_096461978.1 patatin-like phospholipase family protein -
  SVA_RS20355 (SVA_3041) - 3092063..3092842 (-) 780 Protein_3001 S49 family peptidase -
  SVA_RS14930 (SVA_3042) - 3093117..3093461 (+) 345 WP_096461980.1 hypothetical protein -
  SVA_RS14935 (SVA_3043) traF 3093454..3094422 (+) 969 WP_169924125.1 conjugal transfer protein TraF -
  SVA_RS14940 (SVA_3044) - 3094422..3095840 (+) 1419 WP_096461982.1 conjugal transfer protein TraH -
  SVA_RS14945 (SVA_3045) - 3095878..3098994 (+) 3117 WP_096461983.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  SVA_RS14950 (SVA_3046) - 3099046..3099777 (-) 732 WP_148665506.1 hypothetical protein -
  SVA_RS14955 (SVA_3047) - 3099831..3100667 (-) 837 WP_169924126.1 LexA family transcriptional regulator -
  SVA_RS14960 (SVA_3048) - 3100894..3101433 (+) 540 WP_231971797.1 transglycosylase SLT domain-containing protein -
  SVA_RS14965 (SVA_3049) - 3101580..3102119 (+) 540 WP_169924127.1 hypothetical protein -
  SVA_RS14970 (SVA_3050) - 3102116..3102682 (+) 567 WP_096461987.1 FlhC family transcriptional regulator -
  SVA_RS19560 (SVA_3051) - 3103523..3104497 (+) 975 WP_148665507.1 hypothetical protein -
  SVA_RS14975 (SVA_3052) - 3104608..3104853 (-) 246 WP_096461988.1 hypothetical protein -
  SVA_RS14980 (SVA_3053) - 3104857..3106017 (-) 1161 WP_096461989.1 DUF7146 domain-containing protein -
  SVA_RS14985 (SVA_3054) - 3106014..3106205 (-) 192 WP_096461990.1 hypothetical protein -
  SVA_RS14990 (SVA_3055) - 3106481..3108478 (-) 1998 Protein_3015 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent -
  SVA_RS14995 (SVA_3056) - 3108770..3109621 (-) 852 Protein_3016 ribonucleotide reductase N-terminal alpha domain-containing protein -
  SVA_RS15000 - 3109992..3110198 (-) 207 WP_096461993.1 hypothetical protein -
  SVA_RS15005 (SVA_3058) - 3110441..3110770 (-) 330 WP_096461994.1 plasmid-related protein -
  SVA_RS15010 (SVA_3059) - 3110848..3111129 (-) 282 WP_148665508.1 hypothetical protein -
  SVA_RS15015 (SVA_3060) - 3111218..3113014 (-) 1797 WP_169924128.1 VWA domain-containing protein -
  SVA_RS15020 (SVA_3061) - 3113141..3114106 (-) 966 WP_096461997.1 DUF3150 domain-containing protein -
  SVA_RS15025 (SVA_3062) - 3114185..3115012 (-) 828 WP_096461998.1 hypothetical protein -
  SVA_RS15030 (SVA_3063) - 3115009..3116028 (-) 1020 WP_096462978.1 AAA family ATPase -
  SVA_RS15035 (SVA_3064) - 3116245..3116586 (-) 342 WP_096461999.1 hypothetical protein -
  SVA_RS15040 (SVA_3065) radC 3116661..3117143 (-) 483 WP_096462000.1 RadC family protein -
  SVA_RS15045 (SVA_3066) - 3117380..3118393 (-) 1014 WP_096462001.1 YqaJ viral recombinase family protein -
  SVA_RS15050 (SVA_3067) - 3118393..3119352 (-) 960 WP_096462002.1 recombinase RecT -
  SVA_RS15055 (SVA_3068) ssb 3119485..3119943 (-) 459 WP_420823889.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16673.65 Da        Isoelectric Point: 8.3641

>NTDB_id=67432 SVA_RS15055 WP_420823889.1 3119485..3119943(-) (ssb) [Sulfurifustis variabilis strain skN76]
MARGVNKVILVGYLGNDPEVRYTPDQNAVAKVSLATTESWKDKSSGEKQERTEWHRVVLFGRLGEIAGEYLKKGSQVYVE
GRLQTRKWQDKDGAERYTTEIVATDMQMLGARGPGGSAEKPAPSKPSNRAPAAKAVGQDFSPGQDFSDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=67432 SVA_RS15055 WP_420823889.1 3119485..3119943(-) (ssb) [Sulfurifustis variabilis strain skN76]
ATGGCAAGAGGTGTCAACAAGGTCATTCTGGTCGGGTACCTCGGCAATGACCCCGAGGTGCGCTACACCCCGGACCAGAA
CGCCGTGGCCAAGGTCTCGCTCGCCACGACGGAGTCCTGGAAGGACAAGAGCAGCGGCGAGAAGCAGGAGCGCACCGAGT
GGCACCGCGTGGTGCTGTTCGGGCGGCTGGGCGAGATCGCCGGCGAGTACTTGAAGAAGGGCTCGCAGGTCTACGTAGAA
GGCCGGCTGCAGACGCGCAAGTGGCAGGACAAGGACGGCGCCGAGCGTTACACCACCGAGATCGTCGCGACCGACATGCA
GATGCTCGGCGCGCGCGGCCCCGGCGGCAGCGCGGAGAAGCCCGCCCCGTCCAAACCGTCCAACCGGGCGCCCGCCGCGA
AAGCGGTGGGGCAGGATTTCAGTCCCGGCCAGGACTTTTCGGATGACATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.857

100

0.586
  ssb Glaesserella parasuis strain SC1401

48.315

100

0.566
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.52
  ssb Neisseria meningitidis MC58

45.087

100

0.513

Multiple sequence alignment