Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   lgb_RS02090 Genome accession   NZ_CP094882
Coordinates   430542..432752 (+) Length   736 a.a.
NCBI ID   WP_019293626.1    Uniprot ID   -
Organism   Lactococcus petauri strain B1726     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425542..437752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lgb_RS02070 (lgb_00408) - 426132..426776 (+) 645 WP_019293598.1 CPBP family intramembrane glutamic endopeptidase -
  lgb_RS02075 (lgb_00409) - 426923..428479 (+) 1557 WP_019292098.1 ABC-F family ATP-binding cassette domain-containing protein -
  lgb_RS02080 (lgb_00410) - 428645..429820 (+) 1176 WP_019292097.1 SLC13 family permease -
  lgb_RS02085 (lgb_00411) - 429878..430522 (+) 645 WP_019293627.1 helix-hairpin-helix domain-containing protein -
  lgb_RS02090 (lgb_00412) comEC 430542..432752 (+) 2211 WP_019293626.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  lgb_RS02095 (lgb_00413) - 432907..433683 (+) 777 WP_029343492.1 alpha/beta hydrolase -
  lgb_RS02100 (lgb_00414) - 433879..434094 (+) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  lgb_RS02105 (lgb_00415) atpB 434149..434862 (+) 714 WP_019293624.1 F0F1 ATP synthase subunit A -
  lgb_RS02110 (lgb_00416) atpF 434876..435382 (+) 507 WP_004259173.1 F0F1 ATP synthase subunit B -
  lgb_RS02115 (lgb_00417) - 435397..435924 (+) 528 WP_019292093.1 F0F1 ATP synthase subunit delta -
  lgb_RS02120 (lgb_00418) atpA 435990..437498 (+) 1509 WP_004259170.1 F0F1 ATP synthase subunit alpha -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 85118.04 Da        Isoelectric Point: 9.7859

>NTDB_id=673935 lgb_RS02090 WP_019293626.1 430542..432752(+) (comEC) [Lactococcus petauri strain B1726]
MKQKFTLIYLVYLLVFVYFLIFSFSWPLLILSLFSLFIAFYRQYYSLLALLLCFSFFLLMVKKETEVQEIQQPEKISKIT
PYMDTLQVNGNRLSFRGEVNGRDFQAFYTLTSEKEKEYFKNLRIKGIFYIEGTLEIPEEQRNFSGFDYRKYLRTQGISRL
LKIEKIEGFEEKHDFDLRLVRRKAILWTQEHFPSPMSSYMTGLLFGWLDKDFEEMGELYTSLGIIHLFALSGMQVNFFIE
LLRNILLRLGLSRKLVYFIQIPFSIFYAFLTGLSLSILRALLQKNIPIKNSSDRFSITFLLLMIFSPYFLLTTGGQLTML
YSFLITFFSQKFNELKGLKRALLDSTVLAVGVLPLLIFHFHSFQPLSIILTLLFSLIFDFLLLPGLLFVFLLSLFGIDLT
LLNPFFIILESIVRLVGSLFDKPIVFGKPNLIFLLLLFMLSGLALDFYRKRNWNLVVIIVLFFLFFLVKNPKHPNITMVD
VGQGDSILLQDRWNSQNILIDTGGRLKIRADEQWKEGIYKSNAESTLLPYLRASGVSKVDVLIVTHPDEDHIGDLESVAQ
KVPIKNIYVSASALEKKNFVKKLSSLKSQIHIVQEGDKLPIFNSYLRFLTTGGEGKSDNDNSLVTFGEFYGKKFLFTGDL
EEEGEVKLQKEYPHLEVDILKVGHHGSKTSTKEGFLEAIKPKVALISAGKNNRYKHPSQETLHQLTARGIKIYRTDQQGA
TRFLYKKGTWQIQTVK

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=673935 lgb_RS02090 WP_019293626.1 430542..432752(+) (comEC) [Lactococcus petauri strain B1726]
ATGAAACAAAAATTTACGCTTATCTATTTAGTATATCTCTTAGTTTTTGTTTATTTTCTTATTTTCAGTTTTTCATGGCC
TTTACTTATTCTTAGTTTGTTTAGTCTCTTCATCGCTTTTTATCGTCAATACTATAGTTTGTTAGCCCTTTTACTGTGCT
TTAGTTTCTTCTTACTCATGGTAAAAAAAGAGACAGAAGTACAGGAAATACAACAACCAGAAAAAATTTCGAAGATTACC
CCTTATATGGATACTCTTCAAGTGAATGGAAACAGACTCAGTTTCAGGGGAGAAGTGAACGGAAGAGATTTCCAAGCTTT
TTACACATTGACTTCGGAAAAAGAAAAAGAATACTTTAAAAATCTTAGGATAAAGGGGATTTTTTACATTGAAGGCACAT
TAGAGATACCAGAAGAGCAAAGAAACTTTTCAGGTTTTGATTACAGAAAGTATTTAAGGACGCAAGGTATTTCCCGACTT
CTTAAAATAGAAAAAATTGAAGGATTTGAAGAAAAACATGACTTTGATTTACGGCTGGTACGCCGAAAAGCTATTCTTTG
GACACAAGAACATTTTCCTTCTCCCATGTCGTCCTATATGACAGGGCTTCTTTTTGGTTGGTTGGATAAAGACTTTGAAG
AAATGGGGGAACTTTATACTAGCCTCGGTATTATCCATTTATTTGCCCTGTCAGGGATGCAGGTAAATTTTTTTATTGAA
CTTCTTCGAAATATTTTATTAAGGCTAGGTTTATCAAGAAAGTTGGTCTATTTTATCCAAATTCCCTTTTCGATATTTTA
TGCTTTTCTTACTGGCTTATCTCTCTCAATCTTACGTGCGCTTCTTCAAAAAAATATACCTATTAAAAATTCAAGCGATA
GATTTTCTATCACTTTTCTTCTTTTAATGATATTCAGTCCATATTTCCTACTGACAACAGGAGGACAACTGACGATGCTC
TATTCTTTCTTAATCACATTTTTTTCACAAAAATTCAATGAACTAAAAGGATTAAAAAGAGCATTACTTGATTCTACTGT
TCTAGCTGTTGGGGTACTTCCGCTTTTGATTTTTCACTTCCATTCTTTCCAACCATTATCGATTATATTGACTTTATTAT
TTAGTCTGATTTTTGATTTTTTACTTTTGCCTGGTTTACTTTTTGTCTTTCTCCTTTCTTTATTCGGCATTGATCTTACA
TTACTTAATCCTTTTTTTATTATTTTAGAATCAATAGTAAGACTGGTTGGCAGTTTATTTGATAAACCGATTGTATTTGG
CAAACCAAATCTTATTTTTTTACTTTTGCTTTTTATGCTAAGTGGACTTGCACTCGATTTTTACAGAAAAAGGAACTGGA
ACTTAGTTGTAATAATTGTCCTTTTCTTTCTTTTTTTCCTTGTTAAAAATCCTAAACACCCAAATATTACAATGGTAGAT
GTGGGCCAAGGAGACAGCATTCTCTTGCAAGACAGGTGGAACAGTCAAAATATCTTAATTGATACTGGCGGTAGATTAAA
AATAAGAGCTGATGAGCAGTGGAAGGAGGGAATTTATAAGAGCAATGCTGAAAGTACACTTCTACCTTATCTGAGAGCGA
GTGGAGTGAGCAAAGTAGATGTTCTGATTGTGACACATCCAGATGAGGATCATATTGGCGACTTGGAGAGTGTAGCTCAG
AAAGTACCAATAAAAAATATTTATGTATCAGCTAGTGCATTAGAGAAGAAAAATTTTGTTAAAAAACTAAGCAGCTTAAA
AAGTCAGATTCACATTGTGCAAGAGGGAGACAAGCTCCCCATATTTAACAGTTATCTCCGGTTTCTAACGACAGGAGGTG
AAGGAAAAAGCGATAATGATAATTCTTTAGTGACGTTTGGTGAATTTTATGGGAAGAAATTTCTTTTTACAGGTGACTTA
GAAGAAGAGGGAGAGGTTAAACTCCAGAAAGAATATCCACATTTAGAAGTTGATATCCTAAAAGTTGGACATCATGGCAG
TAAGACTTCTACAAAGGAAGGTTTTTTAGAAGCGATTAAGCCTAAGGTTGCTCTTATTTCTGCTGGAAAGAATAATCGAT
ATAAACATCCGAGTCAAGAAACGCTTCACCAATTAACTGCACGAGGAATAAAAATTTATCGGACAGACCAGCAAGGAGCA
ACCCGTTTCCTTTATAAAAAAGGCACTTGGCAAATTCAAACAGTAAAGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(481-689)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(203-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

52.387

99.592

0.522
  comEC/celB Streptococcus mitis SK321

45.101

100

0.457
  comEC/celB Streptococcus pneumoniae TIGR4

43.876

100

0.443
  comEC/celB Streptococcus mitis NCTC 12261

43.801

100

0.442
  comEC/celB Streptococcus pneumoniae Rx1

43.472

100

0.439
  comEC/celB Streptococcus pneumoniae D39

43.472

100

0.439
  comEC/celB Streptococcus pneumoniae R6

43.472

100

0.439