Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MTX62_RS02030 Genome accession   NZ_CP094853
Coordinates   429916..430419 (+) Length   167 a.a.
NCBI ID   WP_000934798.1    Uniprot ID   A0A0Z0SL74
Organism   Staphylococcus aureus strain NY2010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 424916..435419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX62_RS02000 (MTX62_02000) - 425853..426698 (+) 846 WP_001550052.1 ParB/RepB/Spo0J family partition protein -
  MTX62_RS02005 (MTX62_02005) - 426855..427736 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  MTX62_RS02010 (MTX62_02010) - 427766..427969 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  MTX62_RS02015 (MTX62_02015) ychF 427981..429078 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  MTX62_RS02020 (MTX62_02020) - 429164..429355 (-) 192 WP_001052483.1 hypothetical protein -
  MTX62_RS02025 (MTX62_02025) rpsF 429599..429895 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  MTX62_RS02030 (MTX62_02030) ssbA 429916..430419 (+) 504 WP_000934798.1 single-stranded DNA-binding protein Machinery gene
  MTX62_RS02035 (MTX62_02035) rpsR 430471..430713 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  MTX62_RS02040 (MTX62_02040) - 430895..431725 (-) 831 WP_000357934.1 KilA-N domain-containing protein -
  MTX62_RS02045 (MTX62_02045) - 432208..433425 (-) 1218 WP_000270129.1 site-specific integrase -
  MTX62_RS02050 (MTX62_02050) - 433688..434413 (-) 726 WP_000668215.1 helix-turn-helix transcriptional regulator -
  MTX62_RS02055 (MTX62_02055) - 434585..434797 (+) 213 WP_001245562.1 helix-turn-helix transcriptional regulator -
  MTX62_RS02060 (MTX62_02060) - 434798..435070 (+) 273 WP_001138300.1 helix-turn-helix domain-containing protein -
  MTX62_RS02065 (MTX62_02065) - 435082..435237 (+) 156 WP_000784886.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.18 Da        Isoelectric Point: 4.7305

>NTDB_id=673621 MTX62_RS02030 WP_000934798.1 429916..430419(+) (ssbA) [Staphylococcus aureus strain NY2010]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVMCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=673621 MTX62_RS02030 WP_000934798.1 429916..430419(+) (ssbA) [Staphylococcus aureus strain NY2010]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTATGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z0SL74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.386

100

0.557
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365