Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA84_RS11950 Genome accession   NZ_CP094813
Coordinates   2425943..2426449 (-) Length   168 a.a.
NCBI ID   WP_037565084.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6177     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2420943..2431449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA84_RS11920 (MUA84_11915) - 2421395..2422591 (-) 1197 WP_262618401.1 glycerate kinase -
  MUA84_RS11925 (MUA84_11920) chrA 2422715..2423872 (-) 1158 WP_262618403.1 chromate efflux transporter -
  MUA84_RS11930 (MUA84_11925) - 2423885..2424187 (-) 303 WP_186444777.1 PadR family transcriptional regulator -
  MUA84_RS11935 (MUA84_11930) - 2424343..2424720 (+) 378 WP_105996027.1 iron chaperone -
  MUA84_RS11940 (MUA84_11935) - 2424796..2425497 (-) 702 WP_262618406.1 CPBP family intramembrane glutamic endopeptidase -
  MUA84_RS11945 (MUA84_11940) rpsR 2425654..2425896 (-) 243 WP_262618408.1 30S ribosomal protein S18 -
  MUA84_RS11950 (MUA84_11945) ssbA 2425943..2426449 (-) 507 WP_037565084.1 single-stranded DNA-binding protein Machinery gene
  MUA84_RS11955 (MUA84_11950) rpsF 2426473..2426769 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  MUA84_RS11960 (MUA84_11955) - 2426979..2427614 (+) 636 WP_262618409.1 NAD(P)-dependent oxidoreductase -
  MUA84_RS11965 (MUA84_11960) - 2427927..2429495 (-) 1569 WP_262618410.1 IS1182 family transposase -
  MUA84_RS11970 (MUA84_11965) - 2429763..2429984 (+) 222 WP_103345228.1 hypothetical protein -
  MUA84_RS11975 (MUA84_11970) ychF 2430031..2431128 (-) 1098 WP_105995910.1 redox-regulated ATPase YchF -
  MUA84_RS11980 (MUA84_11975) - 2431135..2431341 (-) 207 WP_037565097.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18750.30 Da        Isoelectric Point: 5.1957

>NTDB_id=673121 MUA84_RS11950 WP_037565084.1 2425943..2426449(-) (ssbA) [Staphylococcus agnetis strain IVB6177]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQSFGGQQQGQNSSYQNNNNHSSNNDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=673121 MUA84_RS11950 WP_037565084.1 2425943..2426449(-) (ssbA) [Staphylococcus agnetis strain IVB6177]
ATGCTTAACAGAGTTGTATTAGTAGGTCGATTAACAAAAGATCCAGAATACAGAACGACACCCTCAGGTGTAGGCGTAGC
GACGTTTACTTTAGCAGTGAATCGTACGTTTACAAATAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAAAACGTGAGCAATTTCTTGTTCAAAGGGAGTCTCGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAATCAAGAAGGCCGACGTGTCTATGTGACAGAGGTAGTATGTGACAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGTCAAAGTTTCGGTGGACAACAACAAGGTC
AAAATTCATCATATCAAAACAACAACAATCATTCATCGAACAATGATAACCCATTTGCCAATGCGAATGGCCCTATCGAT
ATTAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.407

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

58.48

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.363