Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JSA_RS01790 | Genome accession | NZ_AP014921 |
| Coordinates | 383115..383618 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain JH4899 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 379052..404846 | 383115..383618 | within | 0 |
Gene organization within MGE regions
Location: 379052..404846
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSA_RS01755 (JSA_0321) | - | 379052..379897 (+) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
| JSA_RS01760 (JSA_0322) | - | 380054..380935 (+) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| JSA_RS01765 (JSA_0323) | - | 380965..381168 (+) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| JSA_RS01770 (JSA_0324) | ychF | 381180..382277 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| JSA_RS01775 (JSA_0325) | - | 382363..382554 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| JSA_RS01785 (JSA_0326) | rpsF | 382798..383094 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| JSA_RS01790 (JSA_0327) | ssbA | 383115..383618 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| JSA_RS01795 (JSA_0328) | rpsR | 383670..383912 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| JSA_RS01800 (JSA_0329) | - | 384094..384924 (-) | 831 | Protein_341 | KilA-N domain-containing protein | - |
| JSA_RS01810 (JSA_0330) | - | 385407..386624 (-) | 1218 | WP_000270122.1 | tyrosine-type recombinase/integrase | - |
| JSA_RS01820 (JSA_0331) | - | 386918..387439 (-) | 522 | WP_001101554.1 | hypothetical protein | - |
| JSA_RS01825 (JSA_0332) | - | 387565..388260 (-) | 696 | WP_000700230.1 | helix-turn-helix domain-containing protein | - |
| JSA_RS01830 (JSA_0333) | - | 388405..388617 (+) | 213 | WP_000608987.1 | helix-turn-helix transcriptional regulator | - |
| JSA_RS01835 (JSA_0334) | - | 388650..388922 (+) | 273 | WP_000867969.1 | hypothetical protein | - |
| JSA_RS01840 (JSA_0335) | - | 388934..389080 (+) | 147 | WP_000784888.1 | hypothetical protein | - |
| JSA_RS01845 (JSA_0336) | tscA | 389073..389282 (+) | 210 | WP_001060744.1 | type II toxin-antitoxin system antitoxin TscA | - |
| JSA_RS01850 (JSA_0337) | tscT | 389285..389584 (+) | 300 | WP_031904328.1 | type II toxin-antitoxin system toxin TscT | - |
| JSA_RS01855 (JSA_0338) | - | 389659..391272 (+) | 1614 | WP_033854769.1 | hypothetical protein | - |
| JSA_RS01860 (JSA_0339) | - | 391443..392246 (+) | 804 | WP_000148371.1 | bifunctional DNA primase/polymerase | - |
| JSA_RS01865 (JSA_0340) | - | 392233..392505 (+) | 273 | WP_001149387.1 | hypothetical protein | - |
| JSA_RS01870 (JSA_0341) | - | 392507..393156 (+) | 650 | Protein_353 | pathogenicity island protein | - |
| JSA_RS01875 (JSA_0342) | - | 393495..393836 (+) | 342 | WP_001161659.1 | hypothetical protein | - |
| JSA_RS01880 (JSA_0343) | - | 393848..394435 (+) | 588 | Protein_355 | pathogenicity island protein | - |
| JSA_RS01885 | - | 394453..394670 (+) | 218 | Protein_356 | capsid morphogenesis B protein | - |
| JSA_RS01890 (JSA_0344) | - | 394721..395248 (+) | 528 | WP_000771356.1 | spore coat protein | - |
| JSA_RS01895 (JSA_0345) | - | 395251..395592 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| JSA_RS01900 (JSA_0346) | - | 395589..396158 (+) | 570 | WP_096391854.1 | terminase small subunit | - |
| JSA_RS01910 (JSA_0347) | - | 396435..397403 (+) | 969 | WP_000801979.1 | Abi family protein | - |
| JSA_RS14970 | - | 397892..398008 (+) | 117 | Protein_361 | hypothetical protein | - |
| JSA_RS01915 (JSA_0348) | - | 398251..398403 (+) | 153 | WP_001795626.1 | hypothetical protein | - |
| JSA_RS01920 | - | 398474..398584 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| JSA_RS01925 (JSA_0349) | - | 398586..398771 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| JSA_RS01930 (JSA_0350) | - | 399910..400847 (-) | 938 | Protein_365 | Abi family protein | - |
| JSA_RS14885 | - | 400886..401587 (-) | 702 | Protein_366 | tyrosine-type recombinase/integrase | - |
| JSA_RS01945 (JSA_0354) | selX | 401793..402404 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| JSA_RS01950 (JSA_0355) | - | 402773..403141 (+) | 369 | WP_000849177.1 | YxeA family protein | - |
| JSA_RS01955 (JSA_0356) | - | 403322..403894 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| JSA_RS01960 (JSA_0357) | - | 404032..404295 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| JSA_RS01965 (JSA_0358) | - | 404595..404846 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=67300 JSA_RS01790 WP_000934799.1 383115..383618(+) (ssbA) [Staphylococcus aureus strain JH4899]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=67300 JSA_RS01790 WP_000934799.1 383115..383618(+) (ssbA) [Staphylococcus aureus strain JH4899]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |