Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OH736_RS33880 Genome accession   NZ_CP109258
Coordinates   7526357..7527430 (+) Length   357 a.a.
NCBI ID   WP_329593651.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01650     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7521357..7532430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH736_RS33850 (OH736_33800) - 7521955..7522452 (+) 498 WP_124719377.1 hypothetical protein -
  OH736_RS33855 (OH736_33805) pdxS 7522622..7523539 (+) 918 WP_329593647.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  OH736_RS33860 (OH736_33810) pdxT 7523546..7524139 (+) 594 WP_124718825.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  OH736_RS33865 (OH736_33815) - 7524201..7524953 (+) 753 WP_093541068.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OH736_RS33870 (OH736_33820) ruvC 7525078..7525650 (+) 573 WP_329593649.1 crossover junction endodeoxyribonuclease RuvC -
  OH736_RS33875 (OH736_33825) ruvA 7525647..7526273 (+) 627 WP_124718827.1 Holliday junction branch migration protein RuvA -
  OH736_RS33880 (OH736_33830) ruvB 7526357..7527430 (+) 1074 WP_329593651.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OH736_RS33885 (OH736_33835) yajC 7527596..7528075 (+) 480 WP_266691944.1 preprotein translocase subunit YajC -
  OH736_RS33890 (OH736_33840) secD 7528221..7529978 (+) 1758 WP_329593653.1 protein translocase subunit SecD -
  OH736_RS33895 (OH736_33845) secF 7529980..7531083 (+) 1104 WP_329593655.1 protein translocase subunit SecF -
  OH736_RS33900 (OH736_33850) - 7531080..7531631 (+) 552 WP_124718832.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38128.49 Da        Isoelectric Point: 4.7708

>NTDB_id=672901 OH736_RS33880 WP_329593651.1 7526357..7527430(+) (ruvB) [Streptomyces sp. NBC_01650]
MNWDETGPDTDERLDESLVHADADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAALARGATADHVLLSGAPGLGKT
SLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIP
LELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPTELERVIHRSARLLDVEIDADGAAEIAGRSRGTPRIANRLLRR
VRDYAQVKADGRIDRPVAATALGVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREG
LLARTPRGRVATPAAWAHLGLVPPQQGGKGQQGLFGA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=672901 OH736_RS33880 WP_329593651.1 7526357..7527430(+) (ruvB) [Streptomyces sp. NBC_01650]
ATGAACTGGGACGAGACCGGACCCGACACCGACGAGCGGCTCGACGAGAGCCTCGTCCATGCCGACGCGGACGGCGAGGA
CACCGCGGTCGAAGCGGCGCTGCGCCCGAAGGACCTGGACGAATTCGTCGGCCAGGAGAAGGTGCGCGAACAGCTCGACC
TGGTCCTCAAGGCGGCCCTGGCCCGCGGCGCCACCGCCGACCACGTCCTGCTCTCCGGCGCCCCCGGTCTCGGCAAGACC
TCCCTCTCCATGATCATCGCGGCCGAGATGGGCGCACCGATCCGGATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGA
CCTCGCCGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCGCGGCCGGCCG
AGGAGATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCAGGCGCCACGGCGATCCCG
CTGGAACTGCCGCCGTTCACCCTGGTCGGCGCGACCACCAGGGCCGGACTGCTGCCGCCGCCGCTGCGCGACCGCTTCGG
CTTCACCGGCCACATGGAGTTCTACGCCCCCACCGAGCTGGAGCGCGTCATCCACCGCTCCGCCCGTCTCCTCGACGTGG
AGATAGACGCGGACGGCGCCGCCGAGATCGCTGGCCGCTCCCGCGGCACCCCCCGGATCGCCAACCGGCTGCTGCGCCGC
GTCCGGGACTACGCCCAGGTCAAGGCCGACGGACGGATCGACCGCCCGGTCGCCGCCACCGCCCTCGGGGTCTACGAGGT
CGATGCCCGCGGTCTCGACCGGCTCGACCGCGCGGTGCTCGGCGCCCTGCTCAAGCTCTTCGGCGGCGGCCCCGTCGGGC
TGTCCACCCTCGCGGTCGCCGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTCGCGGAGCCCTTCCTGGTACGGGAGGGA
TTGCTGGCCAGGACGCCGCGGGGACGGGTCGCGACCCCCGCGGCCTGGGCCCATCTGGGGCTCGTACCTCCGCAGCAAGG
CGGAAAGGGACAACAGGGCCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(270-339)

RuvB AAA lid domain (AAA_lid_4)

(195-268)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(34-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.313

92.997

0.496
  ruvB Synechocystis sp. PCC 6803

53.185

87.955

0.468
  ruvB Streptococcus pneumoniae R6

52.848

88.515

0.468
  ruvB Streptococcus pneumoniae D39

52.848

88.515

0.468
  ruvB Streptococcus pneumoniae TIGR4

52.848

88.515

0.468
  ruvB Helicobacter pylori 26695

50

89.636

0.448