Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA25_RS01830 Genome accession   NZ_CP094801
Coordinates   396626..397129 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain IVB6155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 391626..402129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA25_RS01800 (MUA25_01800) - 392566..393411 (+) 846 WP_001573568.1 ParB/RepB/Spo0J family partition protein -
  MUA25_RS01805 (MUA25_01805) - 393565..394446 (+) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  MUA25_RS01810 (MUA25_01810) - 394476..394679 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  MUA25_RS01815 (MUA25_01815) ychF 394691..395788 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  MUA25_RS01820 (MUA25_01820) - 395874..396065 (-) 192 WP_001052483.1 hypothetical protein -
  MUA25_RS01825 (MUA25_01825) rpsF 396309..396605 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  MUA25_RS01830 (MUA25_01830) ssbA 396626..397129 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  MUA25_RS01835 (MUA25_01835) rpsR 397181..397423 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  MUA25_RS01840 (MUA25_01840) - 397662..398561 (-) 900 WP_262612385.1 Abi family protein -
  MUA25_RS01845 (MUA25_01845) - 398563..399777 (-) 1215 WP_262612387.1 site-specific integrase -
  MUA25_RS01850 (MUA25_01850) - 400056..400685 (-) 630 WP_231858805.1 XRE family transcriptional regulator -
  MUA25_RS01855 (MUA25_01855) - 400708..401232 (-) 525 Protein_369 SAP domain protein -
  MUA25_RS01860 (MUA25_01860) - 401259..401831 (-) 573 WP_001186980.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=672861 MUA25_RS01830 WP_000934799.1 396626..397129(+) (ssbA) [Staphylococcus aureus strain IVB6155]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=672861 MUA25_RS01830 WP_000934799.1 396626..397129(+) (ssbA) [Staphylococcus aureus strain IVB6155]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365