Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   MUA38_RS07635 Genome accession   NZ_CP094800
Coordinates   1599270..1599767 (-) Length   165 a.a.
NCBI ID   WP_029656266.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6158     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594270..1604767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA38_RS07610 (MUA38_07610) gcvPB 1594432..1595904 (-) 1473 WP_262633392.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  MUA38_RS07615 (MUA38_07615) gcvPA 1595897..1597243 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA38_RS07620 (MUA38_07620) gcvT 1597263..1598354 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA38_RS07625 (MUA38_07625) - 1598513..1599037 (-) 525 WP_001015120.1 shikimate kinase -
  MUA38_RS07630 (MUA38_07630) - 1599027..1599173 (-) 147 WP_001789879.1 hypothetical protein -
  MUA38_RS07635 (MUA38_07635) comGF 1599270..1599767 (-) 498 WP_029656266.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA38_RS07640 (MUA38_07640) comGE 1599685..1599984 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA38_RS07645 (MUA38_07645) comGD 1599971..1600416 (-) 446 Protein_1504 competence type IV pilus minor pilin ComGD -
  MUA38_RS07650 (MUA38_07650) comGC 1600394..1600705 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA38_RS07655 (MUA38_07655) comGB 1600719..1601789 (-) 1071 WP_000776417.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA38_RS07660 (MUA38_07660) comGA 1601761..1602735 (-) 975 WP_250426016.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA38_RS07665 (MUA38_07665) - 1602787..1603410 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA38_RS07670 (MUA38_07670) - 1603407..1603736 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA38_RS07675 (MUA38_07675) - 1603736..1604722 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19154.82 Da        Isoelectric Point: 10.2192

>NTDB_id=672836 MUA38_RS07635 WP_029656266.1 1599270..1599767(-) (comGF) [Staphylococcus aureus strain IVB6158]
MILSKVTNKFVLFQKILLLIKRHVYSINVKAFSLIEMLVAMLVISITLLIVPDLIRLSKTFLNESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMLNNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=672836 MUA38_RS07635 WP_029656266.1 1599270..1599767(-) (comGF) [Staphylococcus aureus strain IVB6158]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACTACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGTTGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAAATGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAACAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGCTTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(63-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

95.152

100

0.952
  comGF Staphylococcus aureus MW2

95.152

100

0.952