Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MUA38_RS07660 Genome accession   NZ_CP094800
Coordinates   1601761..1602735 (-) Length   324 a.a.
NCBI ID   WP_250426016.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6158     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1596761..1607735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA38_RS07620 (MUA38_07620) gcvT 1597263..1598354 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA38_RS07625 (MUA38_07625) - 1598513..1599037 (-) 525 WP_001015120.1 shikimate kinase -
  MUA38_RS07630 (MUA38_07630) - 1599027..1599173 (-) 147 WP_001789879.1 hypothetical protein -
  MUA38_RS07635 (MUA38_07635) comGF 1599270..1599767 (-) 498 WP_029656266.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA38_RS07640 (MUA38_07640) comGE 1599685..1599984 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA38_RS07645 (MUA38_07645) comGD 1599971..1600416 (-) 446 Protein_1504 competence type IV pilus minor pilin ComGD -
  MUA38_RS07650 (MUA38_07650) comGC 1600394..1600705 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA38_RS07655 (MUA38_07655) comGB 1600719..1601789 (-) 1071 WP_000776417.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA38_RS07660 (MUA38_07660) comGA 1601761..1602735 (-) 975 WP_250426016.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA38_RS07665 (MUA38_07665) - 1602787..1603410 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA38_RS07670 (MUA38_07670) - 1603407..1603736 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA38_RS07675 (MUA38_07675) - 1603736..1604722 (-) 987 WP_000161315.1 ROK family glucokinase -
  MUA38_RS07680 (MUA38_07680) - 1604719..1604922 (-) 204 WP_000087561.1 YqgQ family protein -
  MUA38_RS07685 (MUA38_07685) - 1604903..1606366 (-) 1464 WP_001017867.1 rhomboid family protein -
  MUA38_RS07690 (MUA38_07690) - 1606378..1606917 (-) 540 WP_000164552.1 5-formyltetrahydrofolate cyclo-ligase -
  MUA38_RS07695 (MUA38_07695) rpmG 1607126..1607275 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36902.97 Da        Isoelectric Point: 8.8508

>NTDB_id=672840 MUA38_RS07660 WP_250426016.1 1601761..1602735(-) (comGA) [Staphylococcus aureus strain IVB6158]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKVILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSNNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=672840 MUA38_RS07660 WP_250426016.1 1601761..1602735(-) (comGA) [Staphylococcus aureus strain IVB6158]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTAATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCTACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAAGATCCTGTAGAGATGCAAATTCCTGGTATTGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGTTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCAATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.383

100

0.994
  comGA Staphylococcus aureus N315

99.383

100

0.994