Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA47_RS01910 Genome accession   NZ_CP094773
Coordinates   418953..419456 (+) Length   167 a.a.
NCBI ID   WP_262634727.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6195     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 413953..424456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA47_RS01880 (MUA47_01880) - 414893..415738 (+) 846 WP_001621659.1 ParB/RepB/Spo0J family partition protein -
  MUA47_RS01885 (MUA47_01885) - 415892..416773 (+) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  MUA47_RS01890 (MUA47_01890) - 416803..417006 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  MUA47_RS01895 (MUA47_01895) ychF 417018..418115 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  MUA47_RS01900 (MUA47_01900) - 418201..418392 (-) 192 WP_001052483.1 hypothetical protein -
  MUA47_RS01905 (MUA47_01905) rpsF 418636..418932 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  MUA47_RS01910 (MUA47_01910) ssbA 418953..419456 (+) 504 WP_262634727.1 single-stranded DNA-binding protein Machinery gene
  MUA47_RS01915 (MUA47_01915) rpsR 419508..419750 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  MUA47_RS01920 (MUA47_01920) - 419986..420993 (-) 1008 WP_233641897.1 Abi family protein -
  MUA47_RS01925 (MUA47_01925) - 420999..421670 (-) 672 Protein_384 tyrosine-type recombinase/integrase -
  MUA47_RS01930 (MUA47_01930) selX 421911..422522 (+) 612 WP_000475322.1 staphylococcal enterotoxin-like toxin X -
  MUA47_RS01935 (MUA47_01935) - 422891..423259 (+) 369 WP_000849165.1 YxeA family protein -
  MUA47_RS01940 (MUA47_01940) - 423440..424012 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  MUA47_RS01945 (MUA47_01945) - 424150..424413 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18523.16 Da        Isoelectric Point: 4.9115

>NTDB_id=672277 MUA47_RS01910 WP_262634727.1 418953..419456(+) (ssbA) [Staphylococcus aureus strain IVB6195]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQVYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=672277 MUA47_RS01910 WP_262634727.1 418953..419456(+) (ssbA) [Staphylococcus aureus strain IVB6195]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGTTTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365