Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA08_RS01865 Genome accession   NZ_CP094747
Coordinates   403541..404044 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain IVB6249     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 403541..423836 403541..404044 within 0


Gene organization within MGE regions


Location: 403541..423836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA08_RS01865 (MUA08_01875) ssbA 403541..404044 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  MUA08_RS01870 (MUA08_01880) rpsR 404096..404338 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  MUA08_RS01875 (MUA08_01885) - 404577..405476 (-) 900 WP_045179037.1 Abi family protein -
  MUA08_RS01880 (MUA08_01890) - 405478..406692 (-) 1215 WP_252559222.1 site-specific integrase -
  MUA08_RS01885 (MUA08_01895) - 407146..407841 (-) 696 WP_000668212.1 helix-turn-helix domain-containing protein -
  MUA08_RS01890 (MUA08_01900) - 407985..408197 (+) 213 WP_252559224.1 helix-turn-helix transcriptional regulator -
  MUA08_RS01895 (MUA08_01905) - 408198..408470 (+) 273 WP_262628349.1 helix-turn-helix domain-containing protein -
  MUA08_RS01900 (MUA08_01910) - 408482..408637 (+) 156 WP_000784883.1 hypothetical protein -
  MUA08_RS01905 (MUA08_01915) - 408622..408825 (+) 204 WP_001662724.1 hypothetical protein -
  MUA08_RS01910 (MUA08_01920) - 408827..409210 (+) 384 WP_001663083.1 hypothetical protein -
  MUA08_RS01915 (MUA08_01925) tscT 409211..409507 (+) 297 WP_162636130.1 type II toxin-antitoxin system toxin TscT -
  MUA08_RS01920 (MUA08_01930) - 409582..411198 (+) 1617 WP_031922538.1 hypothetical protein -
  MUA08_RS01925 (MUA08_01935) - 411374..412177 (+) 804 WP_252559229.1 bifunctional DNA primase/polymerase -
  MUA08_RS01930 (MUA08_01940) - 412164..412436 (+) 273 WP_111762498.1 pathogenicity island protein -
  MUA08_RS01935 (MUA08_01945) - 412438..413079 (+) 642 WP_262628351.1 pathogenicity island protein -
  MUA08_RS01940 (MUA08_01950) - 413615..413956 (+) 342 WP_001190614.1 hypothetical protein -
  MUA08_RS01945 (MUA08_01955) - 413968..414546 (+) 579 WP_070040342.1 pathogenicity island protein -
  MUA08_RS01950 (MUA08_01960) - 414564..414782 (+) 219 WP_000853271.1 capsid morphogenesis B protein -
  MUA08_RS01955 (MUA08_01965) - 414833..415360 (+) 528 WP_250396271.1 spore coat protein -
  MUA08_RS01960 (MUA08_01970) - 415363..415704 (+) 342 WP_045178609.1 hypothetical protein -
  MUA08_RS01965 (MUA08_01975) - 415701..416270 (+) 570 WP_001293074.1 terminase small subunit -
  MUA08_RS01970 (MUA08_01980) - 416545..416715 (+) 171 WP_000022954.1 VraH family peptide resistance protein -
  MUA08_RS14430 - 417218..417316 (+) 99 Protein_393 hypothetical protein -
  MUA08_RS01975 (MUA08_01985) - 417537..418661 (+) 1125 WP_045178611.1 SdrD B-like domain-containing protein -
  MUA08_RS01980 (MUA08_01990) - 419802..420809 (-) 1008 Protein_395 Abi family protein -
  MUA08_RS01985 (MUA08_01995) - 420815..421529 (-) 715 Protein_396 tyrosine-type recombinase/integrase -
  MUA08_RS01990 (MUA08_02000) - 421766..422134 (+) 369 WP_000849155.1 YxeA family protein -
  MUA08_RS01995 (MUA08_02005) - 422315..422887 (+) 573 WP_000769723.1 PepSY domain-containing protein -
  MUA08_RS02000 (MUA08_02010) - 423025..423288 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  MUA08_RS02005 (MUA08_02015) - 423582..423836 (+) 255 WP_000466746.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=671858 MUA08_RS01865 WP_000934799.1 403541..404044(+) (ssbA) [Staphylococcus aureus strain IVB6249]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=671858 MUA08_RS01865 WP_000934799.1 403541..404044(+) (ssbA) [Staphylococcus aureus strain IVB6249]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365