Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG966_RS29910 Genome accession   NZ_CP109137
Coordinates   6561769..6562554 (-) Length   261 a.a.
NCBI ID   WP_326653047.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01750     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6556769..6567554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG966_RS29895 (OG966_29925) - 6557023..6557757 (+) 735 WP_326653044.1 GNAT family N-acetyltransferase -
  OG966_RS29900 (OG966_29930) - 6557817..6559625 (+) 1809 WP_326653045.1 IucA/IucC family siderophore biosynthesis protein -
  OG966_RS29905 (OG966_29935) - 6559678..6561648 (+) 1971 WP_326653046.1 ATP-dependent DNA helicase -
  OG966_RS29910 (OG966_29940) dinR/lexA 6561769..6562554 (-) 786 WP_326653047.1 transcriptional repressor LexA Regulator
  OG966_RS29915 (OG966_29945) nrdR 6563112..6563624 (+) 513 WP_326653048.1 transcriptional regulator NrdR -
  OG966_RS29920 (OG966_29950) - 6563796..6566672 (+) 2877 WP_326653049.1 vitamin B12-dependent ribonucleotide reductase -
  OG966_RS29925 (OG966_29955) - 6566754..6567173 (-) 420 WP_326653050.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28271.03 Da        Isoelectric Point: 8.0891

>NTDB_id=671602 OG966_RS29910 WP_326653047.1 6561769..6562554(-) (dinR/lexA) [Streptomyces sp. NBC_01750]
MTTTADSATITAQDRSQNRFEPVHAMNDAATTPEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRESGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=671602 OG966_RS29910 WP_326653047.1 6561769..6562554(-) (dinR/lexA) [Streptomyces sp. NBC_01750]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAACCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGACCCCGGAGGGTCCCAAGCCCACTCGTTCGCTGCCCGGCCGACCTCCAGGGATCCGGGCAGACAGCT
CCGGCCTCACGGATCGGCAGCGGCGCGTCATCGAGGTGATCAGGGACTCCGTGCAGCGGCGCGGATACCCACCGTCGATG
CGCGAGATCGGTCAGGCGGTAGGCCTGTCCAGCACCTCATCCGTCGCACATCAACTGATGGCGTTGGAGCGCAAGGGTTT
CCTGCGCAGGGACCCGCACCGGCCCAGGGCGTACGAGGTACGTGGATCGGACCAGCCGAGCACCCAGCCGACGGACACGA
CCGGCAAGCCGGCCGCGTCGTACGTGCCACTCGTCGGCCGGATCGCGGCAGGCGGCCCGATCCTCGCGGAGGAATCCGTC
GAGGACGTCTTTCCGCTCCCCCGCCAGCTGGTCGGTGACGGCGAGCTGTTCGTACTGAAGGTCGTCGGTGACTCGATGAT
CGAGGCCGCGATCTGCGACGGGGACTGGGTGACGGTGCGACGCCAGCCCGTCGCGGAGAACGGGGACATCGTCGCCGCGA
TGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGGGAGAGCGGCCATGTGTGGCTGCTCCCCCACAATGCCGCCTAC
CAGCCCATCCCCGGTGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTGCTCCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.755

81.226

0.372