Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA33_RS06860 Genome accession   NZ_CP094736
Coordinates   1377153..1377476 (+) Length   107 a.a.
NCBI ID   WP_262630579.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6222     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1372153..1382476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA33_RS06825 (MUA33_06810) - 1372834..1373037 (+) 204 WP_096596999.1 YqgQ family protein -
  MUA33_RS06830 (MUA33_06815) - 1373034..1374020 (+) 987 WP_096649680.1 ROK family glucokinase -
  MUA33_RS06835 (MUA33_06820) - 1374021..1374332 (+) 312 WP_019165228.1 MTH1187 family thiamine-binding protein -
  MUA33_RS06840 (MUA33_06825) - 1374345..1374974 (+) 630 WP_262609636.1 MBL fold metallo-hydrolase -
  MUA33_RS06845 (MUA33_06830) comGA 1375131..1376105 (+) 975 WP_019165230.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA33_RS06850 (MUA33_06835) - 1376074..1376424 (+) 351 WP_262609637.1 hypothetical protein -
  MUA33_RS06855 (MUA33_06840) - 1376499..1377140 (+) 642 WP_262630578.1 type II secretion system F family protein -
  MUA33_RS06860 (MUA33_06845) comGC 1377153..1377476 (+) 324 WP_262630579.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA33_RS06865 (MUA33_06850) comGD 1377466..1377894 (+) 429 WP_262630580.1 competence type IV pilus minor pilin ComGD -
  MUA33_RS06870 (MUA33_06855) - 1378105..1378590 (+) 486 WP_142302713.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MUA33_RS06875 (MUA33_06860) - 1378754..1379281 (+) 528 WP_096596987.1 shikimate kinase -
  MUA33_RS06880 (MUA33_06865) gcvT 1379439..1380530 (+) 1092 WP_262609641.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA33_RS06885 (MUA33_06870) gcvPA 1380543..1381892 (+) 1350 WP_262609642.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12015.16 Da        Isoelectric Point: 8.5012

>NTDB_id=671602 MUA33_RS06860 WP_262630579.1 1377153..1377476(+) (comGC) [Staphylococcus delphini strain IVB6222]
MIQQLKSKFNQKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR
EGYIKESQKTCKSGEDITIRDGEVVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=671602 MUA33_RS06860 WP_262630579.1 1377153..1377476(+) (comGC) [Staphylococcus delphini strain IVB6222]
ATGATTCAACAACTTAAATCAAAATTTAACCAAAAGAAAGGATTTACTTTAATTGAAATGTTACTTGTGCTGTTAATTAT
TAGTGTGCTATTGATACTCATTATCCCGAATATTGCTAAACAGTCAGATCATATCCAAAAAACGGGCTGTGCAGCACAAT
TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTTCGT
GAAGGCTACATTAAAGAAAGTCAAAAAACATGCAAATCAGGTGAAGATATCACAATCAGAGATGGCGAAGTAGTTGCGTC
ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

73.684

88.785

0.654
  comGC Staphylococcus aureus N315

73.684

88.785

0.654
  comGC Bacillus subtilis subsp. subtilis str. 168

45.161

86.916

0.393
  comYC Streptococcus suis isolate S10

53.947

71.028

0.383
  comGC Lactococcus lactis subsp. cremoris KW2

47.561

76.636

0.364