Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA22_RS12605 Genome accession   NZ_CP094734
Coordinates   2620580..2621086 (-) Length   168 a.a.
NCBI ID   WP_019166018.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6245     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2615580..2626086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA22_RS12580 (MUA22_12565) - 2615684..2617675 (+) 1992 WP_262612937.1 catalase -
  MUA22_RS12585 (MUA22_12570) - 2617752..2618573 (-) 822 WP_262613660.1 MFS transporter -
  MUA22_RS12590 (MUA22_12575) - 2618611..2618985 (-) 375 WP_262612938.1 hypothetical protein -
  MUA22_RS12595 (MUA22_12580) - 2619030..2619911 (-) 882 WP_262612939.1 hypothetical protein -
  MUA22_RS12600 (MUA22_12585) rpsR 2620285..2620527 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  MUA22_RS12605 (MUA22_12590) ssbA 2620580..2621086 (-) 507 WP_019166018.1 single-stranded DNA-binding protein Machinery gene
  MUA22_RS12610 (MUA22_12595) rpsF 2621109..2621405 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  MUA22_RS12615 (MUA22_12600) - 2621746..2623287 (+) 1542 WP_262612940.1 B domain-containing protein -
  MUA22_RS12620 (MUA22_12605) - 2623341..2624150 (-) 810 WP_262612941.1 ABC transporter permease subunit -
  MUA22_RS12625 (MUA22_12610) - 2624143..2625078 (-) 936 WP_262612942.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18724.39 Da        Isoelectric Point: 5.1957

>NTDB_id=671582 MUA22_RS12605 WP_019166018.1 2620580..2621086(-) (ssbA) [Staphylococcus delphini strain IVB6245]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNNHQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=671582 MUA22_RS12605 WP_019166018.1 2620580..2621086(-) (ssbA) [Staphylococcus delphini strain IVB6245]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAATTTCTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAACCAAAACCAAGGTAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATAATCATCAACCCGCTAACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381
  ssb Glaesserella parasuis strain SC1401

34.27

100

0.363