Detailed information NTG0067139

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KF707C_RS04495
• Genome accession: NZ_AP014862
• Coordinates: 961733..962605 (-)
• Length: 290 a.a.
• NCBI ID: WP_003452480.1
• Uniprot ID: A0AAD1BVJ1
• Organism: Metapseudomonas furukawaii strain KF707
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 956733..967605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KF707C_RS04460 (KF707C_8780)	-	957406..957579 (-)	174	WP_004420103.1	DUF3094 family protein	-
KF707C_RS04465 (KF707C_8790)	-	957650..958276 (-)	627	WP_004420101.1	DUF1780 domain-containing protein	-
KF707C_RS04470 (KF707C_8800)	-	958412..958834 (+)	423	WP_004420099.1	GNAT family N-acetyltransferase	-
KF707C_RS04475 (KF707C_8810)	-	958838..959305 (+)	468	WP_004420098.1	hypothetical protein	-
KF707C_RS04480 (KF707C_8820)	-	959302..959988 (+)	687	WP_004420096.1	energy-coupling factor ABC transporter permease	-
KF707C_RS29895	-	960107..960232 (-)	126	WP_269148406.1	hypothetical protein	-
KF707C_RS04485 (KF707C_8840)	yacG	960928..961128 (-)	201	WP_003452484.1	DNA gyrase inhibitor YacG	-
KF707C_RS04490 (KF707C_8850)	coaE	961125..961736 (-)	612	WP_003452481.1	dephospho-CoA kinase	-
KF707C_RS04495 (KF707C_8860)	pilD	961733..962605 (-)	873	WP_003452480.1	A24 family peptidase	Machinery gene
KF707C_RS04500 (KF707C_8870)	pilC	962608..963825 (-)	1218	WP_003452479.1	type II secretion system F family protein	Machinery gene
KF707C_RS04505 (KF707C_8880)	pilB	963828..965534 (-)	1707	WP_003452478.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KF707C_RS04510 (KF707C_8890)	-	965808..966257 (+)	450	WP_003452477.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31921.97 Da
• Isoelectric Point: 6.8186

>NTDB_id=67139 KF707C_RS04495 WP_003452480.1 961733..962605(-) (pilD) [Metapseudomonas furukawaii strain KF707]
MQLIDFLASHVLAFVFCALLLGLLVGSFLNVVIHRLPKMMLRDWQEQAREALELPAEPKGPVFNLVLPNSRCPHCQHEIR
AWENIPVVSYLALGGKCSACKAPISTRYPLVELACGLLSAYLAWHFGFSWQAGAFLVLTWGLLAMSMIDVDHQLLPDALV
LPLLWLGLILNSQGLFVSLEDALWGAVAGYLSLWSVYWVFKLVTGKEGMGHGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AILGVIMLRLRNQDTATPIPFGPYLAIAGWIALLWGDQITATYLQFAGLK

Nucleotide

• Length: 873 bp

>NTDB_id=67139 KF707C_RS04495 WP_003452480.1 961733..962605(-) (pilD) [Metapseudomonas furukawaii strain KF707]
ATGCAATTGATCGACTTTCTGGCCAGCCATGTGCTGGCCTTTGTTTTCTGCGCGCTCCTGCTGGGTCTGCTGGTGGGCAG
CTTCCTCAATGTGGTGATCCATCGCCTGCCGAAGATGATGCTGCGGGACTGGCAGGAGCAGGCCCGGGAAGCCCTGGAAC
TGCCCGCCGAACCCAAGGGGCCGGTCTTCAACCTGGTGCTGCCGAACTCCCGCTGCCCCCATTGCCAGCATGAAATCCGT
GCCTGGGAGAACATCCCGGTGGTGAGCTACCTGGCCCTGGGTGGCAAGTGCTCCGCCTGCAAGGCCCCCATCAGCACCCG
CTATCCGCTCGTGGAACTGGCTTGCGGCCTGCTGTCCGCCTACCTGGCCTGGCACTTCGGCTTCAGCTGGCAAGCCGGCG
CCTTCCTGGTGCTGACCTGGGGCCTGCTGGCCATGAGCATGATCGACGTGGACCATCAGTTACTGCCGGACGCCCTGGTG
CTGCCGCTGCTCTGGCTGGGGCTGATCCTCAACAGCCAGGGGCTGTTCGTCAGCCTGGAAGATGCGCTGTGGGGCGCGGT
GGCGGGCTACCTCAGCCTCTGGTCGGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCCACGGCGACT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTGGGC
GCGATCCTCGGCGTGATCATGCTGCGCCTGCGCAACCAGGACACGGCGACGCCGATCCCCTTCGGTCCCTATCTGGCCAT
TGCCGGCTGGATCGCATTGCTCTGGGGTGATCAAATAACGGCGACCTATCTGCAGTTCGCCGGTCTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.569	94.483	0.534
pilD	Vibrio campbellii strain DS40M4	54.945	94.138	0.517
pilD	Acinetobacter baumannii D1279779	50.347	99.31	0.5
pilD	Acinetobacter nosocomialis M2	49.306	99.31	0.49
pilD	Neisseria gonorrhoeae MS11	51.331	90.69	0.466