Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KF707C_RS04500 Genome accession   NZ_AP014862
Coordinates   962608..963825 (-) Length   405 a.a.
NCBI ID   WP_003452479.1    Uniprot ID   A0AAD1BWU8
Organism   Metapseudomonas furukawaii strain KF707     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 957608..968825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KF707C_RS04465 (KF707C_8790) - 957650..958276 (-) 627 WP_004420101.1 DUF1780 domain-containing protein -
  KF707C_RS04470 (KF707C_8800) - 958412..958834 (+) 423 WP_004420099.1 GNAT family N-acetyltransferase -
  KF707C_RS04475 (KF707C_8810) - 958838..959305 (+) 468 WP_004420098.1 hypothetical protein -
  KF707C_RS04480 (KF707C_8820) - 959302..959988 (+) 687 WP_004420096.1 energy-coupling factor ABC transporter permease -
  KF707C_RS29895 - 960107..960232 (-) 126 WP_269148406.1 hypothetical protein -
  KF707C_RS04485 (KF707C_8840) yacG 960928..961128 (-) 201 WP_003452484.1 DNA gyrase inhibitor YacG -
  KF707C_RS04490 (KF707C_8850) coaE 961125..961736 (-) 612 WP_003452481.1 dephospho-CoA kinase -
  KF707C_RS04495 (KF707C_8860) pilD 961733..962605 (-) 873 WP_003452480.1 A24 family peptidase Machinery gene
  KF707C_RS04500 (KF707C_8870) pilC 962608..963825 (-) 1218 WP_003452479.1 type II secretion system F family protein Machinery gene
  KF707C_RS04505 (KF707C_8880) pilB 963828..965534 (-) 1707 WP_003452478.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KF707C_RS04510 (KF707C_8890) - 965808..966257 (+) 450 WP_003452477.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KF707C_RS04515 (KF707C_8900) - 966330..968324 (+) 1995 WP_003452476.1 sulfatase-like hydrolase/transferase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43980.77 Da        Isoelectric Point: 9.7772

>NTDB_id=67140 KF707C_RS04500 WP_003452479.1 962608..963825(-) (pilC) [Metapseudomonas furukawaii strain KF707]
MADKALKTSTFAWEGTDKKGTKVRGELTGQNPALVKAQLRKQGINPTRVRKKSTSILSAGKKIKPLDIALFTRQMATMMK
AGVPLMQSFDIIGEGFEKPAMRALVNEVKQEVSAGNSLANSLRKKPDYFDELYCNLVDSGEQAGALETLLDRIATYKEKT
EALKAKIKKAMNYPIAVIVVAIIVSAILLIKVVPQFQSVFANFGAELPAFTLMVIGISEMLQEWWFIVLIGLFAFGFAMQ
QAHRKSEKFRDWGDRTVLKLPIVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGASGNVVFKNAVMKVKSDVSTGM
QLNFSMRTTGVFPAMAVQMTAIGEESGALDDMLDKVASFYEAEVDNAVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=67140 KF707C_RS04500 WP_003452479.1 962608..963825(-) (pilC) [Metapseudomonas furukawaii strain KF707]
ATGGCGGATAAAGCGCTGAAAACAAGTACCTTCGCCTGGGAAGGGACGGACAAGAAAGGCACCAAGGTCAGGGGAGAACT
CACGGGGCAGAACCCGGCGCTGGTGAAGGCACAGTTGCGCAAGCAGGGCATCAACCCCACCCGGGTGCGCAAGAAATCCA
CCTCGATCCTCAGCGCCGGCAAGAAGATCAAGCCCCTGGATATCGCGCTCTTTACCCGCCAGATGGCCACCATGATGAAA
GCCGGCGTGCCGCTGATGCAGTCCTTCGACATCATCGGCGAGGGCTTTGAAAAGCCCGCCATGCGCGCCCTGGTCAACGA
GGTGAAGCAGGAAGTGTCCGCCGGTAACAGCCTGGCCAACTCCCTGCGCAAGAAACCCGACTACTTCGATGAGCTCTACT
GCAACCTGGTGGACTCCGGTGAACAGGCCGGCGCCCTGGAAACCCTGCTGGACCGCATTGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCGATGAACTACCCCATCGCCGTGATAGTGGTGGCCATCATCGTATCGGCCAT
CCTGCTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTCTTCGCGAACTTTGGCGCCGAACTGCCCGCATTTACGCTGATGG
TGATCGGTATCTCGGAGATGCTTCAGGAGTGGTGGTTCATCGTCCTGATAGGCCTCTTCGCGTTTGGCTTCGCCATGCAA
CAAGCCCACAGGAAGTCGGAAAAGTTCCGGGACTGGGGCGACCGCACCGTCCTCAAGCTGCCCATCGTCGGCGATATCCT
CTACAAATCCGCCGTCGCTCGTTTTGCTCGCACACTGGCCACCACCTTCGCCGCCGGCGTTCCGCTGGTGGATGCCCTGG
ACTCGGTGGCCGGCGCCAGCGGCAATGTGGTGTTCAAGAATGCGGTGATGAAGGTGAAATCCGACGTGTCCACCGGCATG
CAGCTCAATTTCTCCATGCGCACCACCGGCGTGTTCCCCGCCATGGCGGTTCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCCCTGGACGATATGCTGGACAAGGTGGCCAGCTTCTACGAGGCCGAGGTGGATAACGCCGTGGATGGCCTGACCGCCC
TGATGGAGCCCATGATCATGGCCGTGCTGGGCGTGCTGGTGGGCGGCCTGATCATCGCCATGTACCTCCCCATCTTCCAA
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80

100

0.8
  pilC Acinetobacter baumannii D1279779

61.634

99.753

0.615
  pilC Acinetobacter baylyi ADP1

60.099

100

0.602
  pilC Legionella pneumophila strain ERS1305867

52.141

98.025

0.511
  pilG Neisseria gonorrhoeae MS11

46.535

99.753

0.464
  pilG Neisseria meningitidis 44/76-A

45.926

100

0.459
  pilC Vibrio cholerae strain A1552

41.728

100

0.417
  pilC Vibrio campbellii strain DS40M4

42.105

98.519

0.415
  pilC Thermus thermophilus HB27

36.75

98.765

0.363

Multiple sequence alignment