Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AST80_RS20995 | Genome accession | NZ_AP014857 |
| Coordinates | 4303816..4304352 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168310.1 | Uniprot ID | A0A7U8WHF9 |
| Organism | Escherichia albertii strain EC06-170 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4298816..4309352
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AST80_RS20980 (EAE6F_3947) | - | 4299587..4300003 (+) | 417 | WP_000270382.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| AST80_RS20985 (EAE6F_3948) | - | 4300007..4300363 (+) | 357 | WP_060877554.1 | MmcQ/YjbR family DNA-binding protein | - |
| AST80_RS20990 (EAE6F_3949) | uvrA | 4300742..4303564 (-) | 2823 | WP_060877555.1 | excinuclease ABC subunit UvrA | - |
| AST80_RS20995 (EAE6F_3950) | ssb | 4303816..4304352 (+) | 537 | WP_000168310.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| AST80_RS21000 (EAE6F_3951) | - | 4304626..4304907 (-) | 282 | WP_010338933.1 | YjcB family protein | - |
| AST80_RS21005 (EAE6F_3952) | - | 4305354..4306940 (+) | 1587 | WP_000019704.1 | EAL domain-containing protein | - |
| AST80_RS21010 (EAE6F_3953) | soxS | 4306943..4307266 (-) | 324 | WP_000019352.1 | superoxide response transcriptional regulator SoxS | - |
| AST80_RS21015 (EAE6F_3954) | soxR | 4307352..4307816 (+) | 465 | WP_000412440.1 | redox-sensitive transcriptional activator SoxR | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19005.02 Da Isoelectric Point: 5.2358
>NTDB_id=67130 AST80_RS20995 WP_000168310.1 4303816..4304352(+) (ssb) [Escherichia albertii strain EC06-170]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQSGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQSGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=67130 AST80_RS20995 WP_000168310.1 4303816..4304352(+) (ssb) [Escherichia albertii strain EC06-170]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCAGCGAATATCTGCGCAAAGGTTCCCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGACCAATCTGGCCAGGATCGTTACACCACTGAAGTCGTGGTAAACGTCGG
CGGCACTATGCAGATGTTGGGTGGGCGTCAGAGTGGTGGCGCTCCGGCTGGCGGCAATATCGGTGGCGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAACCGCCGATGGACTTTGATGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCAGCGAATATCTGCGCAAAGGTTCCCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGACCAATCTGGCCAGGATCGTTACACCACTGAAGTCGTGGTAAACGTCGG
CGGCACTATGCAGATGTTGGGTGGGCGTCAGAGTGGTGGCGCTCCGGCTGGCGGCAATATCGGTGGCGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAACCGCCGATGGACTTTGATGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
58.47 |
100 |
0.601 |
| ssb | Neisseria meningitidis MC58 |
48.619 |
100 |
0.494 |
| ssb | Neisseria gonorrhoeae MS11 |
48.619 |
100 |
0.494 |