Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA65_RS10985 Genome accession   NZ_CP094722
Coordinates   2190575..2191084 (-) Length   169 a.a.
NCBI ID   WP_262604146.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6218     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2185575..2196084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA65_RS10965 (MUA65_10950) - 2185761..2187152 (+) 1392 WP_262609246.1 MFS transporter -
  MUA65_RS10970 (MUA65_10955) - 2187167..2188342 (+) 1176 WP_262609247.1 M20 family metallopeptidase -
  MUA65_RS10975 (MUA65_10960) - 2188390..2189780 (-) 1391 Protein_2113 MFS transporter -
  MUA65_RS10980 (MUA65_10965) rpsR 2190283..2190525 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  MUA65_RS10985 (MUA65_10970) ssbA 2190575..2191084 (-) 510 WP_262604146.1 single-stranded DNA-binding protein Machinery gene
  MUA65_RS10990 (MUA65_10975) rpsF 2191110..2191406 (-) 297 WP_262604147.1 30S ribosomal protein S6 -
  MUA65_RS10995 (MUA65_10980) ychF 2191709..2192806 (-) 1098 WP_262604148.1 redox-regulated ATPase YchF -
  MUA65_RS11000 (MUA65_10985) - 2192806..2193018 (-) 213 WP_262604149.1 DUF951 domain-containing protein -
  MUA65_RS11005 (MUA65_10990) - 2193040..2193927 (-) 888 WP_262604150.1 mechanosensitive ion channel family protein -
  MUA65_RS11010 (MUA65_10995) - 2193952..2194764 (-) 813 WP_262609585.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18757.46 Da        Isoelectric Point: 5.2149

>NTDB_id=671279 MUA65_RS10985 WP_262604146.1 2190575..2191084(-) (ssbA) [Staphylococcus sp. IVB6218]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSANQRHAQGSPNNGNDFQSYGQSFGGQQQGQNSSYQNNQPPRNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=671279 MUA65_RS10985 WP_262604146.1 2190575..2191084(-) (ssbA) [Staphylococcus sp. IVB6218]
ATGATTAATAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTTGCAGTGAATCGTACGTTTACGAATGCGCAAGGAGAACGTGAAGCGGACTTTATTAACTGCGTTGTTT
TCCGTAAACAAGCTGAGAATGTTAATAATTTCTTATTCAAAGGTAGCCTTGCAGGTGTTGATGGTCGCTTACAGTCACGC
AGTTACGAAAACCAAGAAGGCCGACGCGTATATGTTACCGAAGTTGTTTGCGATAGTGTTCAATTCCTTGAACCAAAATC
AGCAAATCAACGACATGCACAAGGCAGTCCTAACAATGGAAATGACTTCCAAAGTTATGGACAAAGTTTCGGTGGACAAC
AACAAGGCCAAAATTCGTCATATCAAAACAATCAACCACCACGTAATGACAACCCATTTGCAAATGCGAACGGGCCAATA
GACATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.663
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.604
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.722

0.385
  ssb Glaesserella parasuis strain SC1401

33.88

100

0.367