Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA48_RS11295 Genome accession   NZ_CP094719
Coordinates   2239477..2239986 (-) Length   169 a.a.
NCBI ID   WP_262604146.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6238     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2234477..2244986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA48_RS11275 (MUA48_11245) - 2234663..2236054 (+) 1392 WP_262604144.1 MFS transporter -
  MUA48_RS11280 (MUA48_11250) - 2236069..2237244 (+) 1176 WP_262604145.1 M20 family metallopeptidase -
  MUA48_RS11285 (MUA48_11255) - 2237292..2238682 (-) 1391 Protein_2170 MFS transporter -
  MUA48_RS11290 (MUA48_11260) rpsR 2239185..2239427 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  MUA48_RS11295 (MUA48_11265) ssbA 2239477..2239986 (-) 510 WP_262604146.1 single-stranded DNA-binding protein Machinery gene
  MUA48_RS11300 (MUA48_11270) rpsF 2240012..2240308 (-) 297 WP_262604147.1 30S ribosomal protein S6 -
  MUA48_RS11305 (MUA48_11275) ychF 2240611..2241708 (-) 1098 WP_262604148.1 redox-regulated ATPase YchF -
  MUA48_RS11310 (MUA48_11280) - 2241708..2241920 (-) 213 WP_262604149.1 DUF951 domain-containing protein -
  MUA48_RS11315 (MUA48_11285) - 2241942..2242829 (-) 888 WP_262604150.1 mechanosensitive ion channel family protein -
  MUA48_RS11320 (MUA48_11290) - 2242854..2243666 (-) 813 WP_262604151.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18757.46 Da        Isoelectric Point: 5.2149

>NTDB_id=671180 MUA48_RS11295 WP_262604146.1 2239477..2239986(-) (ssbA) [Staphylococcus sp. IVB6238]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSANQRHAQGSPNNGNDFQSYGQSFGGQQQGQNSSYQNNQPPRNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=671180 MUA48_RS11295 WP_262604146.1 2239477..2239986(-) (ssbA) [Staphylococcus sp. IVB6238]
ATGATTAATAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTTGCAGTGAATCGTACGTTTACGAATGCGCAAGGAGAACGTGAAGCGGACTTTATTAACTGCGTTGTTT
TCCGTAAACAAGCTGAGAATGTTAATAATTTCTTATTCAAAGGTAGCCTTGCAGGTGTTGATGGTCGCTTACAGTCACGC
AGTTACGAAAACCAAGAAGGCCGACGCGTATATGTTACCGAAGTTGTTTGCGATAGTGTTCAATTCCTTGAACCAAAATC
AGCAAATCAACGACATGCACAAGGCAGTCCTAACAATGGAAATGACTTCCAAAGTTATGGACAAAGTTTCGGTGGACAAC
AACAAGGCCAAAATTCGTCATATCAAAACAATCAACCACCACGTAATGACAACCCATTTGCAAATGCGAACGGGCCAATA
GACATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.663
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.604
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.722

0.385
  ssb Glaesserella parasuis strain SC1401

33.88

100

0.367