Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA26_RS10860 Genome accession   NZ_CP094717
Coordinates   2159978..2160487 (-) Length   169 a.a.
NCBI ID   WP_262614205.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6246     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2154978..2165487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA26_RS10840 (MUA26_10805) - 2155161..2156552 (+) 1392 WP_262614203.1 MFS transporter -
  MUA26_RS10845 (MUA26_10810) - 2156568..2157743 (+) 1176 WP_262614204.1 M20 family metallopeptidase -
  MUA26_RS10850 (MUA26_10815) - 2157791..2159183 (-) 1393 Protein_2089 MFS transporter -
  MUA26_RS10855 (MUA26_10820) rpsR 2159686..2159928 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  MUA26_RS10860 (MUA26_10825) ssbA 2159978..2160487 (-) 510 WP_262614205.1 single-stranded DNA-binding protein Machinery gene
  MUA26_RS10865 (MUA26_10830) rpsF 2160513..2160809 (-) 297 WP_044360075.1 30S ribosomal protein S6 -
  MUA26_RS10870 (MUA26_10835) ychF 2161112..2162209 (-) 1098 WP_262614206.1 redox-regulated ATPase YchF -
  MUA26_RS10875 (MUA26_10840) - 2162209..2162421 (-) 213 WP_262614207.1 DUF951 domain-containing protein -
  MUA26_RS10880 (MUA26_10845) - 2162443..2163330 (-) 888 WP_262614208.1 mechanosensitive ion channel family protein -
  MUA26_RS10885 (MUA26_10850) - 2163355..2164167 (-) 813 WP_262614209.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18747.42 Da        Isoelectric Point: 5.2149

>NTDB_id=671117 MUA26_RS10860 WP_262614205.1 2159978..2160487(-) (ssbA) [Staphylococcus sp. IVB6246]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSANQRHAQGSSNNGNDFQSYGQSFGGQQQGQNSSYQNNQPPRNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=671117 MUA26_RS10860 WP_262614205.1 2159978..2160487(-) (ssbA) [Staphylococcus sp. IVB6246]
ATGATTAATAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTTGCAGTGAATCGTACGTTTACGAATGCGCAAGGAGAACGTGAAGCGGACTTTATTAACTGCGTTGTTT
TCCGTAAACAAGCTGAGAATGTTAATAATTTCTTATTCAAAGGTAGCCTTGCAGGTGTTGATGGTCGCTTACAGTCACGC
AGTTACGAAAACCAAGAAGGCCGACGCGTATATGTTACCGAAGTGGTTTGCGATAGTGTTCAATTTCTTGAACCAAAATC
AGCAAATCAACGACATGCACAAGGCAGTTCTAACAATGGAAATGACTTCCAAAGTTACGGACAAAGTTTCGGTGGACAAC
AACAAGGCCAAAATTCGTCATATCAAAACAATCAACCACCACGTAATGACAACCCATTTGCAAATGCGAACGGGCCAATA
GACATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.068

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

59.195

100

0.609
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.722

0.385
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361