Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA40_RS11855 Genome accession   NZ_CP094712
Coordinates   2486087..2486587 (-) Length   166 a.a.
NCBI ID   WP_016425691.1    Uniprot ID   A0A7Z7QRU0
Organism   Staphylococcus schleiferi strain IVB6183     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2481087..2491587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA40_RS11830 (MUA40_11795) - 2481559..2482218 (+) 660 WP_167732733.1 methionine ABC transporter permease -
  MUA40_RS11835 (MUA40_11800) gmpC 2482235..2483074 (+) 840 WP_016425688.1 dipeptide ABC transporter glycylmethionine-binding lipoprotein -
  MUA40_RS11840 (MUA40_11805) add 2483204..2484187 (-) 984 WP_262569624.1 adenosine deaminase -
  MUA40_RS11845 (MUA40_11810) sph 2484555..2485544 (+) 990 WP_262569626.1 sphingomyelin phosphodiesterase -
  MUA40_RS11850 (MUA40_11815) rpsR 2485795..2486037 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  MUA40_RS11855 (MUA40_11820) ssbA 2486087..2486587 (-) 501 WP_016425691.1 single-stranded DNA-binding protein Machinery gene
  MUA40_RS11860 (MUA40_11825) rpsF 2486612..2486908 (-) 297 WP_016425692.1 30S ribosomal protein S6 -
  MUA40_RS11865 (MUA40_11830) - 2487253..2488521 (+) 1269 WP_167732736.1 B domain-containing protein -
  MUA40_RS11870 (MUA40_11835) - 2488632..2488910 (+) 279 WP_016425694.1 hypothetical protein -
  MUA40_RS11875 (MUA40_11840) - 2489282..2489551 (-) 270 WP_228446429.1 trypsin-like serine peptidase -
  MUA40_RS11880 (MUA40_11845) - 2489520..2489939 (-) 420 WP_016425696.1 trypsin-like serine protease -
  MUA40_RS11885 (MUA40_11850) ychF 2490349..2491446 (-) 1098 WP_262569629.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18542.21 Da        Isoelectric Point: 5.1957

>NTDB_id=670985 MUA40_RS11855 WP_016425691.1 2486087..2486587(-) (ssbA) [Staphylococcus schleiferi strain IVB6183]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAINRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHSNQGNDFQSYGQSFGGQQQGQNSSYQNNNQPAHNDNPFANANGPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=670985 MUA40_RS11855 WP_016425691.1 2486087..2486587(-) (ssbA) [Staphylococcus schleiferi strain IVB6183]
ATGCTTAACAGAGTCGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTAGCGATTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTCATTAACTGTGTAGTTT
TTCGTAAACAAGCAGAAAACGTGAACAACTTTTTGTTCAAAGGAAGTTTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTATGAGAACCAAGAAGGCCGACGTGTGTTCGTCACTGAAGTGGTATGTGACAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACTCTAATCAAGGCAATGATTTCCAAAGCTATGGTCAGAGCTTCGGTGGGCAACAACAAGGTCAAA
ATTCGTCATATCAAAATAACAATCAACCCGCACATAACGATAATCCATTTGCGAATGCGAATGGTCCTATCGATATTAGC
GATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7QRU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.205

100

0.681
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.596
  ssb Glaesserella parasuis strain SC1401

35.196

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

66.265

0.38