Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MMY79_RS00940 Genome accession   NZ_CP094657
Coordinates   209195..209788 (+) Length   197 a.a.
NCBI ID   WP_252611331.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 204195..214788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS00915 (MMY79_00915) - 204266..205072 (-) 807 WP_252611327.1 SDR family oxidoreductase -
  MMY79_RS00920 (MMY79_00920) - 205175..205546 (-) 372 WP_049837507.1 MerR family transcriptional regulator -
  MMY79_RS00925 (MMY79_00925) tenA 205612..206286 (-) 675 WP_252611329.1 thiaminase II -
  MMY79_RS00930 (MMY79_00930) - 206549..207631 (+) 1083 WP_016139902.1 DUF475 domain-containing protein -
  MMY79_RS00935 (MMY79_00935) - 207779..209143 (+) 1365 WP_005300707.1 MFS transporter -
  MMY79_RS00940 (MMY79_00940) ssb 209195..209788 (+) 594 WP_252611331.1 single-stranded DNA-binding protein Machinery gene
  MMY79_RS00945 (MMY79_00945) - 209829..210152 (-) 324 WP_252611333.1 AzlD domain-containing protein -
  MMY79_RS00950 (MMY79_00950) - 210149..210844 (-) 696 WP_252611335.1 AzlC family ABC transporter permease -
  MMY79_RS00955 (MMY79_00955) - 210913..211461 (+) 549 WP_017388639.1 XRE family transcriptional regulator -
  MMY79_RS00960 (MMY79_00960) - 211789..213231 (+) 1443 WP_252611337.1 amino acid permease -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21352.12 Da        Isoelectric Point: 6.4832

>NTDB_id=670413 MMY79_RS00940 WP_252611331.1 209195..209788(+) (ssb) [Acinetobacter sp. XS-4]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYNQNSGGGYGSN
PAGFGNGGNSPQGGGFAPKAPQQPGSAPADLDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=670413 MMY79_RS00940 WP_252611331.1 209195..209788(+) (ssb) [Acinetobacter sp. XS-4]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GCTGACTCAATTTTCAATCGCGACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAGCGTAAAGAACAAACTGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGTCAGTGGACTGATCAAAATGGCCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAATAACCAAGGCGGTGGTTATAACCAAAATAGTGGTGGCGGCTATGGCAGCAAC
CCAGCTGGCTTTGGTAATGGTGGTAACAGCCCGCAAGGTGGGGGCTTTGCTCCTAAAGCACCACAACAGCCTGGGTCTGC
TCCAGCAGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.325

100

0.513
  ssb Vibrio cholerae strain A1552

44.059

100

0.452
  ssb Neisseria meningitidis MC58

38.974

98.985

0.386
  ssb Neisseria gonorrhoeae MS11

37.949

98.985

0.376