Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MP622_RS13260 Genome accession   NZ_CP094643
Coordinates   2812588..2813733 (+) Length   381 a.a.
NCBI ID   WP_243791331.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2807588..2818733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS13240 (MP622_13240) - 2808166..2810181 (-) 2016 WP_243791325.1 TonB-dependent copper receptor -
  MP622_RS13245 (MP622_13245) - 2810250..2810678 (-) 429 WP_243791327.1 DUF2946 family protein -
  MP622_RS13250 (MP622_13250) def 2810768..2811301 (-) 534 WP_044739598.1 peptide deformylase -
  MP622_RS13255 (MP622_13255) tsaP 2811421..2812575 (+) 1155 WP_243791329.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MP622_RS13260 (MP622_13260) dprA 2812588..2813733 (+) 1146 WP_243791331.1 DNA-processing protein DprA Machinery gene
  MP622_RS13265 (MP622_13265) - 2813772..2814341 (+) 570 WP_243791333.1 Sua5/YciO/YrdC/YwlC family protein -
  MP622_RS13270 (MP622_13270) - 2814733..2815662 (-) 930 WP_243791334.1 DMT family transporter -
  MP622_RS13275 (MP622_13275) - 2815798..2816556 (+) 759 WP_044739593.1 helix-turn-helix transcriptional regulator -
  MP622_RS13280 (MP622_13280) - 2816663..2817208 (+) 546 WP_243791336.1 redoxin domain-containing protein -
  MP622_RS13285 (MP622_13285) - 2817381..2817797 (+) 417 WP_243791338.1 RcnB family protein -
  MP622_RS13290 (MP622_13290) - 2817948..2818520 (+) 573 WP_243791340.1 hypothetical protein -

Sequence


Protein


Download         Length: 381 a.a.        Molecular weight: 43048.91 Da        Isoelectric Point: 7.1248

>NTDB_id=670329 MP622_RS13260 WP_243791331.1 2812588..2813733(+) (dprA) [Acinetobacter sp. PK01]
MLKPLSQVQMDTITLWYLVQHSLSSFYKLEQHFGSIHNAVQPQNLQDWSKLGLHKNHIQRAQQFYTQSEQSKFQHLIQEI
ERHSDFVLSYHDPEYPQQLLPYSDKPPILFGQGQLSLLMQPQIAIVGSRKPSPHGRQIAYDFSYYLSEKGFVISSGLAQG
IDEAAHQGALSHQRTLAVMGTGLDQTYPAQHRQLRQQILQHSGAIISEFLPHTPPLRQHFPRRNRIVSALSLGTLVAEAG
LKSGSISTATFAAEQGKLIFAIPGHIYSEFHQGCHQLIREGAILVSHPEQILEDLALPTQWQTQQQSQNDSTSHSVLAKP
EIPEHLIPLYNQLNWTGSPLDHLVIHLKQDTATLTAQLMELELLGLCMQQSGVYLRCRPNQ

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=670329 MP622_RS13260 WP_243791331.1 2812588..2813733(+) (dprA) [Acinetobacter sp. PK01]
ATGCTGAAACCATTATCACAAGTGCAAATGGACACCATTACCTTGTGGTATTTGGTTCAGCACTCGCTCAGCAGTTTTTA
TAAACTCGAACAACACTTTGGTAGCATCCATAACGCAGTACAACCCCAAAATTTGCAAGATTGGTCAAAATTAGGTTTAC
ATAAAAATCATATTCAACGTGCACAACAATTTTATACCCAGTCTGAACAAAGTAAGTTTCAGCACCTTATTCAAGAAATT
GAGCGACATAGTGATTTCGTACTGAGTTATCACGATCCCGAATATCCACAACAATTGCTGCCTTATAGTGATAAACCCCC
AATTCTATTTGGACAAGGACAACTTTCGCTGTTGATGCAGCCACAAATTGCCATTGTCGGCAGTCGTAAACCCAGTCCAC
ATGGTCGCCAAATTGCCTATGATTTTTCGTATTATCTCAGTGAAAAGGGTTTTGTGATTAGCAGTGGCTTAGCACAAGGG
ATTGATGAGGCTGCACATCAAGGCGCTTTATCTCATCAACGTACACTGGCAGTCATGGGCACAGGACTCGATCAAACTTA
TCCCGCACAGCATCGGCAACTTCGCCAGCAAATTTTGCAGCATTCAGGTGCCATTATCAGTGAGTTTTTACCCCATACTC
CGCCGCTACGACAACATTTTCCACGCCGAAATCGGATTGTCAGTGCCCTTTCTTTGGGAACTCTTGTGGCAGAAGCAGGT
TTAAAAAGTGGTTCAATCTCAACAGCCACCTTTGCAGCAGAACAAGGAAAATTAATTTTCGCAATTCCTGGGCATATTTA
TAGTGAATTCCATCAAGGTTGCCATCAACTGATTCGCGAAGGCGCAATTTTGGTCAGCCATCCTGAACAAATTTTAGAAG
ACCTTGCTTTACCGACACAATGGCAAACACAGCAGCAATCACAAAACGACTCAACCTCACATTCAGTCCTTGCAAAGCCC
GAGATTCCCGAGCATTTAATACCACTTTATAATCAACTGAACTGGACAGGATCTCCGCTAGACCATTTGGTCATTCATCT
TAAGCAAGATACCGCGACATTGACTGCCCAGTTGATGGAATTAGAGCTTTTAGGTTTATGTATGCAACAATCTGGAGTGT
ATTTGCGTTGTCGTCCTAACCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.667

99.213

0.661

  dprA Acinetobacter baumannii D1279779

65.873

99.213

0.654

  dprA Acinetobacter baylyi ADP1

61.316

99.738

0.612