Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   MP622_RS13255 Genome accession   NZ_CP094643
Coordinates   2811421..2812575 (+) Length   384 a.a.
NCBI ID   WP_243791329.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2806421..2817575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS13240 (MP622_13240) - 2808166..2810181 (-) 2016 WP_243791325.1 TonB-dependent copper receptor -
  MP622_RS13245 (MP622_13245) - 2810250..2810678 (-) 429 WP_243791327.1 DUF2946 family protein -
  MP622_RS13250 (MP622_13250) def 2810768..2811301 (-) 534 WP_044739598.1 peptide deformylase -
  MP622_RS13255 (MP622_13255) tsaP 2811421..2812575 (+) 1155 WP_243791329.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MP622_RS13260 (MP622_13260) dprA 2812588..2813733 (+) 1146 WP_243791331.1 DNA-processing protein DprA Machinery gene
  MP622_RS13265 (MP622_13265) - 2813772..2814341 (+) 570 WP_243791333.1 Sua5/YciO/YrdC/YwlC family protein -
  MP622_RS13270 (MP622_13270) - 2814733..2815662 (-) 930 WP_243791334.1 DMT family transporter -
  MP622_RS13275 (MP622_13275) - 2815798..2816556 (+) 759 WP_044739593.1 helix-turn-helix transcriptional regulator -
  MP622_RS13280 (MP622_13280) - 2816663..2817208 (+) 546 WP_243791336.1 redoxin domain-containing protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42007.13 Da        Isoelectric Point: 7.4252

>NTDB_id=670328 MP622_RS13255 WP_243791329.1 2811421..2812575(+) (tsaP) [Acinetobacter sp. PK01]
MKKVLKGMPSFSALGFKQQLLALTVGLAISVGSIAVVEAAPARNVNPPSLKAGAPQVYVVKKGDTLWDISGKFLDKPWRW
PEIWASNRHVKNPHWIFPGDKLLLCSYQGKPLIGKDEGDGCDGIIRRYAGGTKLQPQVRVESLNDAIPVIPLDNIKQWLE
HSTIVAPESVENTPYVLGTADQRVLAAKGQTIYARGNGLEVGQQYAVYREGDPYTLSNEKGKKYNAGLELNQVATGIAVA
SENDITTLELTDSFNAEVRRGDRVLPVYDPMLPTLFYPTMAEDVTAGGQIVRVMGSIGTAAQHSVVTIDRGSFEGVQVGH
VFSINQKGEQVRDPKTKEMVQLPGQKIGNLMVFRTFDHFSYGYVLDSSLPIKIGAYIQPPLMDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=670328 MP622_RS13255 WP_243791329.1 2811421..2812575(+) (tsaP) [Acinetobacter sp. PK01]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAACAGCAATTGTTGGCACTGACTGTCGGTTT
GGCGATCAGTGTTGGTTCTATCGCAGTAGTTGAAGCTGCACCAGCTCGTAATGTTAATCCACCTTCATTAAAAGCAGGTG
CACCACAAGTTTATGTGGTGAAAAAGGGTGACACCCTCTGGGATATTTCGGGGAAATTTTTAGATAAACCTTGGCGCTGG
CCTGAAATTTGGGCAAGTAACCGTCACGTGAAAAATCCACACTGGATTTTCCCTGGCGATAAACTTTTACTTTGTAGCTA
TCAAGGCAAACCCCTGATAGGTAAAGATGAAGGTGATGGCTGTGATGGTATTATCCGTCGTTATGCTGGCGGCACCAAAC
TACAACCTCAGGTCCGCGTCGAATCCTTAAATGATGCTATTCCTGTAATTCCATTGGACAATATTAAACAATGGTTAGAA
CATTCAACGATTGTTGCTCCTGAGTCAGTAGAAAATACACCTTATGTACTAGGTACTGCTGATCAACGCGTATTGGCAGC
CAAAGGGCAAACCATCTATGCGCGTGGCAATGGCTTAGAAGTGGGCCAGCAATATGCAGTTTATCGCGAAGGTGACCCGT
ACACCCTCAGCAATGAAAAAGGCAAAAAGTATAATGCTGGACTTGAGCTGAATCAGGTGGCGACGGGCATAGCTGTTGCA
AGTGAAAATGACATTACAACACTGGAACTCACAGATAGCTTTAATGCCGAAGTACGTCGTGGTGACCGTGTACTCCCTGT
TTATGACCCAATGTTGCCTACCCTGTTCTATCCAACCATGGCTGAAGATGTAACGGCTGGAGGGCAAATTGTTCGCGTGA
TGGGTTCTATTGGTACGGCTGCCCAACACAGCGTCGTGACAATAGATCGCGGTAGTTTTGAAGGCGTGCAAGTGGGCCAT
GTATTTAGCATCAACCAAAAAGGTGAACAGGTTCGAGACCCGAAAACCAAAGAAATGGTGCAATTGCCTGGACAAAAAAT
TGGTAACTTAATGGTGTTCAGAACTTTTGATCACTTTAGCTATGGCTATGTGCTTGACAGTTCCTTACCTATCAAAATCG
GTGCTTATATTCAACCACCATTAATGGATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.571

100

0.687