Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG440_RS35775 Genome accession   NZ_CP109046
Coordinates   8101049..8101720 (+) Length   223 a.a.
NCBI ID   WP_406010908.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00637 strain NBC 00637     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8096049..8106720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG440_RS35760 (OG440_35820) - 8097190..8098185 (-) 996 WP_406010905.1 helix-turn-helix transcriptional regulator -
  OG440_RS35765 (OG440_35825) - 8098289..8098711 (+) 423 WP_406010906.1 VOC family protein -
  OG440_RS35770 (OG440_35830) - 8098839..8100662 (-) 1824 WP_406010907.1 serine/threonine-protein kinase -
  OG440_RS35775 (OG440_35835) dinR/lexA 8101049..8101720 (+) 672 WP_406010908.1 transcriptional repressor LexA Regulator
  OG440_RS35780 (OG440_35840) - 8101808..8102620 (+) 813 WP_406010909.1 SDR family NAD(P)-dependent oxidoreductase -
  OG440_RS35785 (OG440_35845) - 8102736..8103911 (-) 1176 WP_406010910.1 amidohydrolase -
  OG440_RS35790 (OG440_35850) - 8104252..8105439 (+) 1188 WP_406010911.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24294.66 Da        Isoelectric Point: 6.4929

>NTDB_id=670277 OG440_RS35775 WP_406010908.1 8101049..8101720(+) (dinR/lexA) [Streptomyces sp. NBC_00637 strain NBC 00637]
MENTASARRGRPPGPRTAEGELTNRQSAIVRYITESVARQGYPPSMREIGQAVELASTSSVAHQLMALERKGVLYRDPQR
PRAYRVRPSWAPDLGTRSETRVDVPLVGRIAAGAPLLAEEMVEDVYAMPRQVVGDGDLFALTVSGDSMIDAAICDGDIVT
VRRQDSADHGDVVAALLDDEATVKVLRRQDGQVWLMPRNPAYAPIRGDQAQILGKVVGVLRLL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=670277 OG440_RS35775 WP_406010908.1 8101049..8101720(+) (dinR/lexA) [Streptomyces sp. NBC_00637 strain NBC 00637]
ATGGAGAACACCGCGTCCGCCCGCCGGGGCCGTCCCCCGGGGCCACGGACCGCCGAAGGAGAGCTGACGAACCGCCAGTC
GGCCATCGTCCGCTACATCACGGAATCGGTCGCCCGACAGGGCTACCCGCCGTCGATGCGGGAGATCGGCCAGGCCGTGG
AGCTCGCCAGCACGTCCTCGGTCGCCCACCAGCTGATGGCCCTCGAACGCAAGGGCGTGCTCTACCGCGACCCGCAACGC
CCCCGCGCCTACCGGGTCCGGCCCTCGTGGGCGCCCGACCTGGGCACCAGGAGCGAGACACGGGTGGACGTACCCCTCGT
CGGGCGGATCGCGGCCGGCGCCCCGCTGCTCGCCGAGGAGATGGTCGAGGACGTCTACGCCATGCCCCGCCAGGTCGTGG
GCGACGGCGACCTGTTCGCCCTGACGGTCTCCGGTGACTCCATGATCGACGCGGCGATCTGCGACGGCGACATCGTGACG
GTACGGCGCCAGGACAGCGCCGATCACGGGGACGTCGTCGCGGCCCTCCTGGACGACGAGGCCACCGTCAAGGTGCTGCG
CCGACAGGACGGGCAGGTGTGGCTCATGCCCCGCAATCCGGCCTACGCGCCGATCCGCGGCGACCAGGCGCAGATCCTCG
GCAAGGTCGTCGGCGTCCTGCGCCTGCTCTAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.842

91.031

0.399