Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MTX16_RS14375 Genome accession   NZ_CP094624
Coordinates   2804858..2805370 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus thuringiensis strain LX43     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2799858..2810370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX16_RS14355 rplI 2801069..2801515 (-) 447 WP_000864228.1 50S ribosomal protein L9 -
  MTX16_RS14360 - 2801512..2803485 (-) 1974 WP_001113785.1 DHH family phosphoesterase -
  MTX16_RS14365 - 2803564..2804499 (-) 936 WP_000814840.1 YybS family protein -
  MTX16_RS14370 rpsR 2804579..2804812 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  MTX16_RS14375 ssbA 2804858..2805370 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  MTX16_RS14380 rpsF 2805397..2805687 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  MTX16_RS14385 ychF 2805879..2806979 (-) 1101 WP_000524657.1 redox-regulated ATPase YchF -
  MTX16_RS14390 - 2807095..2807292 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  MTX16_RS14395 - 2807313..2808194 (-) 882 WP_000364814.1 mechanosensitive ion channel family protein -
  MTX16_RS14400 yyaC 2808454..2809050 (+) 597 WP_001020714.1 spore protease YyaC -
  MTX16_RS14405 spo0J 2809071..2809922 (-) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=670277 MTX16_RS14375 WP_000981966.1 2804858..2805370(-) (ssbA) [Bacillus thuringiensis strain LX43]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=670277 MTX16_RS14375 WP_000981966.1 2804858..2805370(-) (ssbA) [Bacillus thuringiensis strain LX43]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTCGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394