Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MST18_RS14640 Genome accession   NZ_CP094555
Coordinates   3066634..3067221 (-) Length   195 a.a.
NCBI ID   WP_078193176.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3061634..3072221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS14620 (MST18_14605) - 3062855..3063733 (-) 879 WP_078193173.1 pirin family protein -
  MST18_RS14625 (MST18_14610) ycaC 3064062..3064688 (+) 627 WP_078193174.1 isochorismate family cysteine hydrolase YcaC -
  MST18_RS14630 (MST18_14615) - 3064796..3065719 (+) 924 WP_180025069.1 LysR substrate-binding domain-containing protein -
  MST18_RS14635 (MST18_14620) ahpC 3065787..3066350 (-) 564 WP_078190520.1 alkyl hydroperoxide reductase subunit C -
  MST18_RS14640 (MST18_14625) ssb 3066634..3067221 (-) 588 WP_078193176.1 single-stranded DNA-binding protein Machinery gene
  MST18_RS14645 (MST18_14630) - 3067273..3068637 (-) 1365 WP_111884498.1 MFS transporter -
  MST18_RS14650 (MST18_14635) - 3068793..3069878 (-) 1086 WP_180035454.1 DUF475 domain-containing protein -
  MST18_RS14655 (MST18_14640) tenA 3070086..3070751 (+) 666 WP_180132782.1 thiaminase II -
  MST18_RS14660 (MST18_14645) - 3070863..3071585 (-) 723 WP_180132783.1 hypothetical protein -
  MST18_RS14665 (MST18_14650) - 3071775..3072113 (-) 339 WP_180132784.1 GlpM family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21479.18 Da        Isoelectric Point: 6.4819

>NTDB_id=670188 MST18_RS14640 WP_078193176.1 3066634..3067221(-) (ssb) [Acinetobacter sp. YH12068_T]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQGGQERYTTEIRGEQMQMLDNNRQQGEQGQGGDFGQPRFNNQQGGYNNNQNQGGYGNSSNQGGYGNNQPAQ
GNSYGNNNPGGFAPKQQPAPTPAPAAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=670188 MST18_RS14640 WP_078193176.1 3066634..3067221(-) (ssb) [Acinetobacter sp. YH12068_T]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTGGGTCGTGACCCTGAAACAAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAGTTTTCAATTGCAACGAGTGATTCATGGACAGATAAAAATACAGGTGAACGTAAAGAGCAAACAGAATGGC
ACCGTATTGTGTTACATAACCGCTTAGGTGAAATTGCACAGCAATATTTGCGCAAAGGTTCTAAAGTGTATATTGAAGGT
TCATTACGTACTCGTCAGTGGACAGATCAAGGCGGTCAAGAGCGTTACACGACTGAAATTCGTGGTGAACAAATGCAAAT
GCTTGACAATAATCGCCAACAAGGCGAACAAGGTCAAGGCGGTGATTTTGGTCAGCCTCGTTTTAATAATCAACAAGGTG
GTTATAACAATAACCAAAACCAAGGTGGCTACGGTAATAGCTCAAACCAAGGCGGTTATGGCAATAACCAACCGGCTCAA
GGCAATAGCTATGGCAATAACAACCCAGGTGGTTTTGCGCCAAAACAACAGCCTGCACCGACACCGGCTCCTGCAGCAGC
AGATTTAGATGACGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.308

100

0.523
  ssb Vibrio cholerae strain A1552

45.96

100

0.467
  ssb Neisseria gonorrhoeae MS11

40.415

98.974

0.4
  ssb Neisseria meningitidis MC58

40.415

98.974

0.4