Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MST17_RS15100 Genome accession   NZ_CP094545
Coordinates   3099125..3099712 (-) Length   195 a.a.
NCBI ID   WP_078193176.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3094125..3104712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS15075 (MST17_15050) ycaC 3095309..3095941 (+) 633 WP_180025950.1 isochorismate family cysteine hydrolase YcaC -
  MST17_RS15080 (MST17_15055) - 3096049..3096972 (+) 924 WP_180025914.1 LysR substrate-binding domain-containing protein -
  MST17_RS15085 (MST17_15060) ahpC 3097040..3097603 (-) 564 WP_180025913.1 alkyl hydroperoxide reductase subunit C -
  MST17_RS15090 (MST17_15065) - 3097766..3098404 (-) 639 WP_180025912.1 TetR/AcrR family transcriptional regulator -
  MST17_RS15095 (MST17_15070) - 3098538..3099002 (+) 465 WP_180025911.1 hotdog fold domain-containing protein -
  MST17_RS15100 (MST17_15075) ssb 3099125..3099712 (-) 588 WP_078193176.1 single-stranded DNA-binding protein Machinery gene
  MST17_RS15105 (MST17_15080) - 3099764..3101128 (-) 1365 WP_111884498.1 MFS transporter -
  MST17_RS15110 (MST17_15085) - 3101284..3102369 (-) 1086 WP_180025910.1 DUF475 domain-containing protein -
  MST17_RS15115 (MST17_15090) tenA 3102577..3103242 (+) 666 WP_180025909.1 thiaminase II -
  MST17_RS15120 (MST17_15095) - 3103354..3104076 (-) 723 WP_180002745.1 hypothetical protein -
  MST17_RS15125 (MST17_15100) - 3104266..3104604 (-) 339 WP_180002743.1 GlpM family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21479.18 Da        Isoelectric Point: 6.4819

>NTDB_id=670151 MST17_RS15100 WP_078193176.1 3099125..3099712(-) (ssb) [Acinetobacter sp. YH16056_T]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQGGQERYTTEIRGEQMQMLDNNRQQGEQGQGGDFGQPRFNNQQGGYNNNQNQGGYGNSSNQGGYGNNQPAQ
GNSYGNNNPGGFAPKQQPAPTPAPAAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=670151 MST17_RS15100 WP_078193176.1 3099125..3099712(-) (ssb) [Acinetobacter sp. YH16056_T]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTGGGTCGTGACCCTGAAACAAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAGTTCTCAATTGCAACGAGTGATTCATGGACAGATAAAAATACAGGTGAACGTAAAGAGCAAACAGAATGGC
ACCGTATTGTGTTACATAACCGCTTAGGTGAAATTGCACAGCAATATTTGCGCAAAGGTTCTAAAGTTTATATTGAAGGT
TCATTACGTACTCGTCAGTGGACAGATCAAGGCGGTCAAGAGCGTTACACGACTGAAATTCGTGGTGAACAAATGCAAAT
GCTTGACAATAATCGCCAACAAGGCGAACAAGGTCAAGGCGGTGATTTTGGTCAGCCTCGTTTTAATAATCAACAAGGTG
GTTATAACAATAACCAAAACCAAGGTGGCTACGGTAATAGCTCAAACCAAGGCGGTTATGGCAATAACCAACCGGCTCAA
GGCAATAGCTATGGCAATAACAACCCAGGTGGTTTTGCGCCAAAACAACAGCCTGCACCGACACCGGCTCCTGCAGCAGC
AGATTTAGATGATGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.308

100

0.523
  ssb Vibrio cholerae strain A1552

45.96

100

0.467
  ssb Neisseria gonorrhoeae MS11

40.415

98.974

0.4
  ssb Neisseria meningitidis MC58

40.415

98.974

0.4