Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MST17_RS00915 Genome accession   NZ_CP094545
Coordinates   193977..195158 (-) Length   393 a.a.
NCBI ID   WP_180026134.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 188977..200158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS00885 (MST17_00885) - 189141..189764 (-) 624 WP_180026137.1 hypothetical protein -
  MST17_RS00890 (MST17_00890) - 189908..190270 (-) 363 WP_257246877.1 RcnB family protein -
  MST17_RS00895 (MST17_00895) - 190484..191029 (-) 546 WP_180026136.1 glutathione peroxidase -
  MST17_RS00900 (MST17_00900) - 191174..191932 (-) 759 WP_180022165.1 helix-turn-helix transcriptional regulator -
  MST17_RS00905 (MST17_00905) - 192055..192936 (+) 882 WP_180026135.1 DMT family transporter -
  MST17_RS00910 (MST17_00910) - 193376..193945 (-) 570 WP_111885874.1 L-threonylcarbamoyladenylate synthase -
  MST17_RS00915 (MST17_00915) dprA 193977..195158 (-) 1182 WP_180026134.1 DNA-processing protein DprA Machinery gene
  MST17_RS00920 (MST17_00920) tsaP 195270..196424 (-) 1155 WP_180022161.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MST17_RS00925 (MST17_00925) def 196544..197074 (+) 531 WP_078191459.1 peptide deformylase -
  MST17_RS00930 (MST17_00930) - 197165..197584 (+) 420 WP_180026133.1 DUF2946 family protein -
  MST17_RS00935 (MST17_00935) - 197657..199717 (+) 2061 WP_180026132.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 44189.21 Da        Isoelectric Point: 6.7606

>NTDB_id=670114 MST17_RS00915 WP_180026134.1 193977..195158(-) (dprA) [Acinetobacter sp. YH16056_T]
MLNSLTDLHLDYIRLWFVVQHSLRSFYKIQQHYPALHHALKPDQITTWQKLGLHKNHLQRFEEFHSPSGQLSFEKCLKDI
QQYSDFVLIPEDLNYPQQLLPYSDKPPILFGQGNAQALMQPQIAIVGSRKPSPQGRQIAYDFAYYLSEQGFYINSGLAQG
IDEAAHRAAIQHHRTIAVMGTGLDQTYPTAHQRLRQEIIQHGGTVISEFLPHTPPLQHHFPHRNRIVSGLSLGVIVAEAA
LKSGSLITAQRAAEQGKSIFAIPGHIYSESHQGCHQLIREGAILIDHPQQVIEDLALATQWQSQAAETLTTTEIATPETA
TPDTPPPEPIPEHLIALYRQLDWVGQSLDQLSIQLKIDTATLTSQLMELELMGYATQQAGHYLRCRMGKLGSQ

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=670114 MST17_RS00915 WP_180026134.1 193977..195158(-) (dprA) [Acinetobacter sp. YH16056_T]
ATGCTCAACTCATTGACTGACTTGCATTTAGATTACATTCGCCTGTGGTTTGTGGTGCAACACTCACTTCGTAGTTTCTA
TAAAATTCAGCAGCACTATCCTGCCCTACACCACGCCCTTAAGCCTGATCAAATCACCACATGGCAAAAATTAGGACTGC
ATAAAAATCATTTACAGCGCTTTGAAGAATTTCATAGTCCAAGTGGACAGCTTAGCTTTGAAAAATGTCTCAAGGATATT
CAACAATACAGTGACTTTGTACTGATTCCTGAAGACCTGAACTATCCTCAACAGCTTTTACCTTATAGCGACAAGCCGCC
CATTCTATTTGGGCAAGGTAATGCCCAAGCCTTGATGCAACCCCAAATTGCGATTGTTGGTAGCCGCAAACCTAGTCCCC
AAGGTCGGCAAATTGCTTATGATTTTGCTTATTATCTAAGTGAGCAAGGGTTCTACATCAATAGCGGTTTAGCACAAGGA
ATTGATGAAGCGGCACATCGCGCTGCCATACAACACCACAGAACCATTGCCGTGATGGGCACAGGTTTAGATCAAACTTA
TCCGACCGCACATCAGCGTTTAAGACAAGAGATCATCCAACATGGTGGGACCGTAATCAGTGAGTTTCTTCCACACACTC
CACCCCTGCAACACCATTTTCCACATCGAAATCGTATCGTCAGTGGGCTCAGCCTTGGTGTCATCGTGGCGGAAGCGGCA
TTAAAAAGTGGTTCACTGATCACAGCTCAACGCGCTGCCGAACAAGGCAAATCTATTTTTGCCATCCCAGGCCATATTTA
TAGTGAGTCGCATCAAGGTTGCCATCAACTCATACGCGAAGGTGCAATTTTGATTGATCATCCACAACAGGTCATTGAAG
ACTTAGCATTGGCAACACAGTGGCAATCACAAGCTGCCGAAACATTAACAACCACCGAAATAGCGACACCCGAAACAGCA
ACACCGGACACTCCACCACCCGAACCCATCCCAGAACATTTAATTGCGCTGTATCGGCAACTCGATTGGGTCGGCCAAAG
CCTTGATCAATTGTCCATTCAACTCAAAATTGATACCGCGACATTGACCAGTCAACTGATGGAATTAGAGTTAATGGGCT
ATGCCACACAACAAGCCGGACACTACTTACGTTGTAGAATGGGTAAATTAGGTTCACAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

61.917

98.219

0.608

  dprA Acinetobacter baumannii D1279779

61.399

98.219

0.603

  dprA Acinetobacter baylyi ADP1

59.585

98.219

0.585