Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   MST17_RS00920 Genome accession   NZ_CP094545
Coordinates   195270..196424 (-) Length   384 a.a.
NCBI ID   WP_180022161.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 190270..201424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS00895 (MST17_00895) - 190484..191029 (-) 546 WP_180026136.1 glutathione peroxidase -
  MST17_RS00900 (MST17_00900) - 191174..191932 (-) 759 WP_180022165.1 helix-turn-helix transcriptional regulator -
  MST17_RS00905 (MST17_00905) - 192055..192936 (+) 882 WP_180026135.1 DMT family transporter -
  MST17_RS00910 (MST17_00910) - 193376..193945 (-) 570 WP_111885874.1 L-threonylcarbamoyladenylate synthase -
  MST17_RS00915 (MST17_00915) dprA 193977..195158 (-) 1182 WP_180026134.1 DNA-processing protein DprA Machinery gene
  MST17_RS00920 (MST17_00920) tsaP 195270..196424 (-) 1155 WP_180022161.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MST17_RS00925 (MST17_00925) def 196544..197074 (+) 531 WP_078191459.1 peptide deformylase -
  MST17_RS00930 (MST17_00930) - 197165..197584 (+) 420 WP_180026133.1 DUF2946 family protein -
  MST17_RS00935 (MST17_00935) - 197657..199717 (+) 2061 WP_180026132.1 TonB-dependent copper receptor -
  MST17_RS00940 (MST17_00940) - 199765..200971 (-) 1207 Protein_177 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42019.38 Da        Isoelectric Point: 9.3946

>NTDB_id=670115 MST17_RS00920 WP_180022161.1 195270..196424(-) (tsaP) [Acinetobacter sp. YH16056_T]
MKKVLKGMPTFSALGFKKQLLALTVCVSVGMGMVSVAEAAPARNVNPPSLKAGAPQVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCTYNGRPIIGKDEGDGCEGIIRRYTGGTKLQPQVRVESLNSAIPVIPLEYIKQWLE
RSMIVAADSVEGTPYILGTADQRVLAAKGQTVYARGQGMQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGVAVR
GENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAENVTAGGSVVRVMGSIGTAAVHSVVTIDRGSLQGVQSGQ
VFSVNQKGEIVTDPKTKERVQLPGQRIGNIMVFKTFDNLSYAYVLESELPIKVGATIQPPLMDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=670115 MST17_RS00920 WP_180022161.1 195270..196424(-) (tsaP) [Acinetobacter sp. YH16056_T]
ATGAAAAAGGTTTTGAAGGGCATGCCAACTTTTAGTGCCTTGGGGTTTAAAAAACAATTATTGGCACTTACAGTCTGTGT
AAGTGTGGGGATGGGAATGGTCAGTGTTGCAGAAGCTGCCCCTGCTCGTAACGTCAATCCACCGTCATTGAAGGCAGGTG
CCCCTCAAGTTTATGTGGTGAAAAAAGGCGATACGTTGTGGGATATTTCCAAGCGTTTCTTAAAAAATCCCGTGCGCTGG
CCTGAAATCTGGGCGAGCAATAAACACGTGAAAAATCCGCACTGGATTTTCCCAGGTGACCGCCTATTAATGTGTACCTA
CAATGGCCGCCCAATCATCGGTAAGGATGAAGGTGATGGCTGTGAAGGTATTATTCGTCGCTATACAGGTGGCACTAAAC
TTCAACCACAAGTTCGTGTTGAATCCCTCAACAGTGCGATTCCGGTTATCCCATTAGAATATATTAAGCAATGGCTTGAG
CGCAGCATGATTGTTGCCGCTGATTCTGTTGAAGGCACACCTTACATTTTAGGTACAGCTGATCAACGTGTATTAGCTGC
CAAAGGCCAAACAGTTTATGCACGCGGCCAAGGCATGCAAGTCGGTCAACGATATGCTGTTTACCGTGAAGGCGAACCGT
ACATCTTTACCGATGCAAACGGCAAAAAATACAACGCAGGTTTAGAACTGACTCAAGTCGCTTCAGGTGTTGCCGTTCGT
GGTGAAAATGACATTACCACTTTAGAACTAACCGATACTTATAATGCTGAAGTTCGTCGTGGCGATCGTGTTCTTCCTGA
ATATGACCCAATGCTGCCAACACTGTTCTATCCAACCAATGCAGAAAATGTCACTGCTGGCGGTAGTGTAGTTCGTGTTA
TGGGCTCGATTGGTACTGCAGCGGTTCACAGTGTTGTGACGATCGACCGTGGTAGCTTGCAAGGCGTTCAATCTGGTCAA
GTCTTTAGCGTGAACCAAAAAGGTGAAATCGTGACTGATCCAAAAACCAAAGAACGTGTTCAACTTCCAGGACAACGTAT
TGGTAACATTATGGTATTCAAAACGTTTGATAACCTAAGCTATGCTTATGTACTTGAAAGCGAATTACCAATCAAAGTAG
GTGCAACGATTCAGCCACCACTGATGGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.61

100

0.698