Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG788_RS37675 Genome accession   NZ_CP109040
Coordinates   8600967..8601455 (-) Length   162 a.a.
NCBI ID   WP_406376952.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00647     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8595967..8606455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG788_RS37660 (OG788_37675) - 8597953..8598222 (+) 270 WP_406375460.1 transposase -
  OG788_RS37665 (OG788_37680) - 8598215..8599462 (+) 1248 WP_406375462.1 transposase -
  OG788_RS37670 (OG788_37685) - 8599661..8600149 (+) 489 WP_406375463.1 carboxymuconolactone decarboxylase family protein -
  OG788_RS37675 (OG788_37690) cytR 8600967..8601455 (-) 489 WP_406376952.1 substrate-binding domain-containing protein Regulator
  OG788_RS37680 - 8601346..8601573 (+) 228 WP_406375464.1 hypothetical protein -
  OG788_RS37685 (OG788_37695) - 8601607..8602851 (-) 1245 WP_406375465.1 IS110 family transposase -
  OG788_RS37690 (OG788_37700) - 8603176..8603340 (+) 165 Protein_7445 pirin family protein -
  OG788_RS37695 (OG788_37705) - 8603832..8604626 (+) 795 WP_406375466.1 SigB/SigF/SigG family RNA polymerase sigma factor -
  OG788_RS37700 (OG788_37710) - 8605015..8605164 (+) 150 Protein_7447 ABC transporter permease -
  OG788_RS37705 (OG788_37715) - 8605244..8605849 (+) 606 WP_406375467.1 hypothetical protein -
  OG788_RS37710 (OG788_37720) - 8605843..8606214 (-) 372 Protein_7449 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17059.33 Da        Isoelectric Point: 6.4910

>NTDB_id=670111 OG788_RS37675 WP_406376952.1 8600967..8601455(-) (cytR) [Streptomyces sp. NBC_00647]
MRLRHRRIAWIGGPLGSTPSAERFHGYQAALHSAGIMPDGVMIRHDAFSVEAGLQHAHDMLALDERPTAIVAGNDEIAVG
ALAAANELHITVPGDLSVTGFDDTPQAQWTTPRLTSVGQPLVGMGRMAVETALGMANGVQPASRHLQLATTLNVRDSTGP
AT

Nucleotide


Download         Length: 489 bp        

>NTDB_id=670111 OG788_RS37675 WP_406376952.1 8600967..8601455(-) (cytR) [Streptomyces sp. NBC_00647]
ATCAGGCTGCGCCACCGCAGGATCGCCTGGATCGGCGGCCCGCTGGGTTCCACTCCCTCGGCAGAGCGCTTCCACGGGTA
CCAGGCCGCGCTGCACTCGGCGGGCATCATGCCGGACGGCGTAATGATCCGCCACGACGCGTTCTCCGTCGAAGCGGGAC
TTCAGCACGCCCATGACATGCTGGCGCTCGACGAGCGGCCAACCGCGATCGTCGCGGGCAACGACGAAATCGCTGTCGGG
GCGCTCGCTGCGGCTAATGAACTCCATATCACCGTCCCGGGGGATCTATCGGTTACCGGGTTCGACGACACGCCGCAGGC
ACAATGGACAACCCCCCGGCTGACGTCCGTCGGGCAGCCGCTCGTCGGCATGGGCCGGATGGCCGTCGAGACTGCCCTCG
GTATGGCGAACGGCGTCCAGCCCGCCTCCCGGCACCTCCAGCTGGCGACCACCCTCAACGTACGTGACTCCACAGGCCCT
GCCACATGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(2-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

42.236

99.383

0.42
  cytR Vibrio parahaemolyticus RIMD 2210633

40.994

99.383

0.407