Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MST16_RS15930 Genome accession   NZ_CP094541
Coordinates   3231860..3233041 (+) Length   393 a.a.
NCBI ID   WP_180010745.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3226860..3238041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS15910 (MST16_15880) - 3227265..3229361 (-) 2097 WP_180010739.1 TonB-dependent copper receptor -
  MST16_RS15915 (MST16_15885) - 3229435..3229854 (-) 420 WP_180010841.1 DUF2946 family protein -
  MST16_RS15920 (MST16_15890) def 3229944..3230474 (-) 531 WP_180010741.1 peptide deformylase -
  MST16_RS15925 (MST16_15895) tsaP 3230594..3231748 (+) 1155 WP_180010743.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MST16_RS15930 (MST16_15900) dprA 3231860..3233041 (+) 1182 WP_180010745.1 DNA-processing protein DprA Machinery gene
  MST16_RS15935 (MST16_15905) - 3233073..3233642 (+) 570 WP_111885874.1 L-threonylcarbamoyladenylate synthase -
  MST16_RS15940 (MST16_15910) - 3234083..3234964 (-) 882 WP_180010747.1 DMT family transporter -
  MST16_RS15945 (MST16_15915) - 3235087..3235845 (+) 759 WP_180010749.1 helix-turn-helix transcriptional regulator -
  MST16_RS15950 (MST16_15920) - 3235990..3236535 (+) 546 WP_111885877.1 glutathione peroxidase -
  MST16_RS15955 (MST16_15925) - 3236757..3237134 (+) 378 WP_180010751.1 RcnB family protein -
  MST16_RS15960 (MST16_15930) - 3237278..3237901 (+) 624 WP_180010753.1 hypothetical protein -

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 44151.17 Da        Isoelectric Point: 6.8413

>NTDB_id=670111 MST16_RS15930 WP_180010745.1 3231860..3233041(+) (dprA) [Acinetobacter sp. YH16040_T]
MLNSLTDLHLDYIRLWFVVQHSLRSFYKIQQHYPALHHALKPDQITTWQKLGLHKNHLQRFEEFHSPSGQLSFEKCLKDI
EQYSDFVLIPEDLNYPQQLLPYSDKPPILFGQGNAQALMQPQIAIVGSRKPSPQGRQIAYDFAYYLSEQGFYINSGLAQG
IDEAAHRAAIQHHRTIAVMGTGLDQTYPTAHQRLRQEIIQHGGTVISEFLPHTPPLQHHFPHRNRIVSGLSLGVIVAEAA
LKSGSLITAQRAAEQGKSIFAIPGHIYSESHQGCHQLIREGAILIDHPQQVIEDLALATQWQSQAAETLTTTEIATPKTA
TSDTPPPEPIPDHLVALYRQLDWVGQSLDQLSIQLKIDTATLTSQLMELELMGYATQQAGHYLRCRMGKLGSQ

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=670111 MST16_RS15930 WP_180010745.1 3231860..3233041(+) (dprA) [Acinetobacter sp. YH16040_T]
ATGCTCAACTCATTGACTGACTTGCATTTAGATTACATTCGCCTGTGGTTTGTGGTGCAACACTCACTTCGTAGTTTCTA
TAAAATTCAGCAGCACTATCCTGCCCTACACCACGCCCTTAAGCCTGATCAAATCACCACATGGCAAAAATTAGGACTGC
ATAAAAATCATTTACAGCGCTTTGAAGAATTTCATAGTCCAAGTGGACAGCTTAGCTTTGAAAAATGTCTCAAGGATATT
GAACAATACAGTGACTTTGTACTGATTCCTGAAGACCTGAACTATCCTCAACAGCTTTTACCTTATAGCGACAAGCCGCC
CATTCTATTTGGGCAAGGTAATGCCCAAGCCTTGATGCAACCCCAAATTGCGATTGTTGGTAGCCGCAAACCTAGTCCCC
AAGGTCGGCAAATTGCTTATGATTTTGCTTATTATCTGAGTGAGCAAGGGTTCTATATCAATAGCGGTTTAGCACAAGGA
ATTGATGAAGCGGCACATCGCGCTGCCATACAACACCACAGAACCATTGCCGTGATGGGTACAGGTTTAGATCAAACTTA
TCCGACCGCACATCAGCGTTTAAGACAAGAAATCATCCAACATGGGGGAACCGTAATCAGTGAGTTTCTTCCACACACTC
CCCCATTGCAACACCATTTTCCACATCGAAATCGTATCGTCAGTGGGCTCAGTCTTGGTGTCATCGTGGCGGAGGCGGCA
TTAAAAAGTGGCTCACTGATCACAGCTCAACGCGCTGCCGAACAAGGCAAATCTATTTTTGCCATCCCAGGCCATATTTA
TAGTGAGTCACATCAAGGTTGCCATCAACTCATACGCGAAGGTGCAATTTTGATTGATCATCCACAACAGGTTATTGAAG
ACTTGGCACTAGCCACACAGTGGCAATCACAGGCTGCCGAAACCTTAACAACCACCGAAATAGCCACACCAAAAACAGCA
ACATCGGACACACCTCCACCCGAACCCATACCGGACCATTTAGTTGCATTGTATCGGCAGCTTGATTGGGTCGGCCAAAG
CCTTGATCAATTGTCCATTCAACTCAAAATTGATACCGCGACATTGACCAGTCAACTGATGGAATTAGAGTTAATGGGCT
ATGCCACACAACAAGCCGGACACTACCTACGTTGTCGAATGGGTAAATTAGGTTCACAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

61.14

98.219

0.601

  dprA Acinetobacter baumannii D1279779

59.845

98.219

0.588

  dprA Acinetobacter baylyi ADP1

59.326

98.219

0.583