Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OG788_RS37360 Genome accession   NZ_CP109040
Coordinates   8521360..8523714 (-) Length   784 a.a.
NCBI ID   WP_406375413.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00647     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8516360..8528714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG788_RS37340 (OG788_37350) - 8516550..8518499 (+) 1950 WP_406375411.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  OG788_RS37345 (OG788_37355) - 8518496..8519245 (+) 750 WP_356756138.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  OG788_RS37350 (OG788_37360) - 8519511..8520281 (+) 771 WP_406375412.1 GNAT family N-acetyltransferase -
  OG788_RS37355 (OG788_37365) - 8520359..8521234 (+) 876 WP_406376950.1 lysophospholipid acyltransferase family protein -
  OG788_RS37360 (OG788_37370) uvrA 8521360..8523714 (-) 2355 WP_406375413.1 ATP-binding cassette domain-containing protein Machinery gene
  OG788_RS37365 (OG788_37375) - 8523802..8524851 (-) 1050 WP_406375414.1 LLM class flavin-dependent oxidoreductase -
  OG788_RS37370 (OG788_37380) - 8524959..8525459 (-) 501 WP_406375415.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG788_RS37375 (OG788_37385) - 8525694..8526467 (+) 774 WP_406375416.1 nuclear transport factor 2 family protein -
  OG788_RS37380 (OG788_37390) - 8526545..8527513 (+) 969 WP_406375417.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 84098.39 Da        Isoelectric Point: 7.2434

>NTDB_id=670110 OG788_RS37360 WP_406375413.1 8521360..8523714(-) (uvrA) [Streptomyces sp. NBC_00647]
MPSPDGRPHDPYVRVRGAREHNLRGVDVDIPRDVLVVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAP
KVAEITGLPPAVSLQQRRSAPTSRSSVGTVTNLSNSLRMLFSRAGEYPAGAERLDSDAFSPNTAAGACPECHGLGQVHRT
TEELLVPDPSLSIREGAIAAWPGAWQGKNLRDILDTLGYDVDRPWRELSAEEREWILFTDEQPVVTVHPVREAERIQRPY
QGTYMSARRYVMKTFSDTKSATLRAKAERFLSAAPCPLCGGSRLRREALAVTFAGRSIAELAALPLVELAKSLTGDSETA
RVLTEDLTSRIAPVVELGLGYLSLDRATPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLTVLERLKA
AGNSVFVVEHHFDVVRGADWLVDVGPHAGEHGGRVLHSGPVAALEDVPESATARFLFDRSPAPARPVRPPRGRVTVGPVN
RHNLRGVTAEFPLGVFTAVTGVSGSGKSTLIGEVTEELAGVGRLVGVDQKPIGRTPRSNLATYTGLFDVVRKVFAATEEA
TARGYGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYNPQTLEVTYRGRNIAQVLDLTVEAAARFFA
ETDTPAVTRSLATLLDVGLGYLRLGQPATELSGGEAQRIKLASELQRVRRGHTFYLLDEPTTGLHPADVEVLMRQLHGLV
DAGHTVVVVEHDMTVVAGADWVIDLGPGGGEEGGRVVAAGPPARVATAAGRTAPYLTRALGRLR

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=670110 OG788_RS37360 WP_406375413.1 8521360..8523714(-) (uvrA) [Streptomyces sp. NBC_00647]
ATGCCCAGCCCCGACGGCCGCCCCCACGACCCCTACGTCCGCGTCCGCGGTGCGCGGGAGCACAATCTGCGGGGTGTGGA
CGTCGACATCCCCCGGGACGTCCTCGTCGTGTTCACCGGTGTTTCGGGGTCCGGGAAGTCGTCGCTGGCCTTCGGGACGA
TCTACGCGGAGGCGCAGCGGCGGTACTTCGAGTCGGTCGCCCCGTACGCGCGGCGGCTGATCCATCAGGTGGGGGCTCCG
AAGGTCGCGGAGATCACCGGGCTGCCGCCGGCGGTGTCCCTCCAGCAGCGGAGGTCGGCTCCGACCTCGCGCTCGTCCGT
GGGCACGGTCACCAATCTGTCCAACTCGCTGCGGATGCTGTTCTCGAGGGCGGGTGAGTACCCGGCCGGCGCCGAGCGGC
TGGACTCGGACGCGTTCTCGCCGAACACCGCGGCCGGGGCGTGCCCCGAGTGCCACGGTCTCGGTCAAGTGCACCGGACG
ACGGAGGAGTTGCTCGTCCCCGATCCCTCGCTGTCGATCCGCGAGGGCGCGATCGCCGCCTGGCCGGGGGCGTGGCAGGG
CAAGAACCTGCGGGACATCCTCGACACGCTCGGGTACGACGTGGACCGGCCCTGGCGCGAGCTGTCCGCCGAGGAGCGGG
AGTGGATCCTGTTCACGGACGAGCAGCCGGTGGTCACCGTGCATCCGGTGCGCGAGGCCGAACGCATCCAACGCCCGTAC
CAGGGCACGTACATGAGTGCGCGCCGTTATGTCATGAAGACGTTCTCCGACACCAAGAGCGCCACCCTGCGGGCGAAGGC
GGAGCGGTTCCTCTCCGCTGCTCCCTGTCCGCTGTGCGGCGGCAGCAGGCTGCGGCGCGAGGCGCTGGCGGTGACGTTCG
CGGGGCGGAGCATCGCCGAACTGGCCGCGCTGCCGCTGGTCGAACTCGCGAAGTCCCTCACGGGCGACTCCGAGACCGCC
CGTGTCCTGACCGAGGACCTCACGTCCCGTATCGCGCCCGTCGTCGAACTCGGGCTCGGCTACCTCAGCCTCGACCGGGC
GACCCCCACCCTGTCGGCCGGGGAACTCCAACGGCTGCGTCTGGCGACACAGTTGCGCTCCGGGCTCTTCGGCGTGGTGT
ACGTCCTCGACGAGCCGTCCGCCGGACTGCACCCGGCGGACACGGAGGCTCTGCTCACCGTGCTGGAGCGGTTGAAGGCG
GCGGGCAACTCGGTGTTCGTCGTGGAGCACCACTTCGATGTCGTACGCGGCGCGGACTGGCTGGTCGACGTGGGCCCGCA
CGCCGGGGAGCACGGCGGGCGCGTCCTGCACAGCGGCCCGGTCGCCGCGCTCGAGGACGTACCGGAGTCCGCGACGGCGC
GCTTCCTCTTCGACCGCTCCCCCGCCCCGGCCCGCCCGGTGCGCCCGCCTCGCGGCCGGGTGACGGTCGGCCCGGTGAAC
CGGCACAATCTGCGCGGCGTCACCGCCGAGTTCCCGCTCGGTGTGTTCACCGCGGTCACCGGGGTCTCCGGCTCCGGGAA
GTCCACGCTGATCGGCGAGGTGACGGAGGAGCTGGCGGGCGTCGGCCGGCTGGTCGGTGTCGATCAGAAGCCCATCGGTC
GTACCCCCCGGTCCAATCTGGCCACGTACACAGGGCTGTTCGACGTGGTGCGCAAGGTGTTCGCCGCGACGGAGGAGGCC
ACGGCGCGCGGCTACGGCGTGGGGCGGTTCTCCTTCAACGTCGCCGGAGGGCGCTGCGAGACCTGTCAGGGCGAGGGCTT
CGTCAGTGTGGAGCTGCTGTTCCTGCCCAGTACCTACGCCCCGTGCCCGGACTGCGGCGGCGCGCGCTACAACCCCCAGA
CCCTCGAAGTGACGTACCGGGGACGGAACATCGCGCAGGTGCTGGATCTGACGGTCGAGGCGGCGGCGCGGTTCTTCGCC
GAGACGGACACCCCGGCCGTCACGCGCAGCCTCGCCACGCTGCTCGACGTGGGCCTCGGCTATCTGCGACTCGGCCAGCC
CGCGACGGAGTTGTCGGGCGGCGAGGCCCAGCGCATCAAGCTGGCGAGCGAGTTGCAGCGGGTTCGCCGGGGGCACACCT
TCTATCTGCTCGACGAACCGACGACGGGACTGCACCCGGCCGATGTCGAGGTGCTGATGCGGCAGTTGCACGGTCTGGTG
GACGCCGGGCACACCGTCGTGGTGGTGGAGCACGACATGACGGTCGTCGCGGGTGCCGACTGGGTGATCGATCTGGGTCC
CGGCGGGGGCGAGGAGGGCGGTCGCGTCGTCGCCGCCGGGCCGCCCGCGCGGGTGGCGACAGCGGCCGGCAGAACGGCGC
CCTACCTCACCCGCGCGCTCGGGCGGCTCCGGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(484-701)

UvrA DNA-binding domain (UvrA_DNA-bind)

(163-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

42.438

86.862

0.369
  uvrA Streptococcus pneumoniae TIGR4

42.438

86.862

0.369
  uvrA Streptococcus pneumoniae D39

42.438

86.862

0.369