Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MST16_RS00975 Genome accession   NZ_CP094541
Coordinates   204902..205489 (+) Length   195 a.a.
NCBI ID   WP_078190523.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 199902..210489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS00950 (MST16_00950) - 200010..200348 (+) 339 WP_180002743.1 GlpM family protein -
  MST16_RS00955 (MST16_00955) - 200538..201260 (+) 723 WP_180010619.1 hypothetical protein -
  MST16_RS00960 (MST16_00960) tenA 201372..202037 (-) 666 WP_078193179.1 thiaminase II -
  MST16_RS00965 (MST16_00965) - 202245..203330 (+) 1086 WP_180010617.1 DUF475 domain-containing protein -
  MST16_RS00970 (MST16_00970) - 203486..204850 (+) 1365 WP_111884498.1 MFS transporter -
  MST16_RS00975 (MST16_00975) ssb 204902..205489 (+) 588 WP_078190523.1 single-stranded DNA-binding protein Machinery gene
  MST16_RS00980 (MST16_00980) - 205734..206210 (-) 477 WP_218946159.1 transposase family protein -
  MST16_RS00985 (MST16_00985) - 206158..206556 (-) 399 WP_180010615.1 transposase family protein -
  MST16_RS00990 (MST16_00990) - 206795..207799 (+) 1005 WP_180002755.1 T6SS immunity protein Tli4 family protein -
  MST16_RS00995 (MST16_00995) ahpC 208286..208849 (+) 564 WP_078190520.1 alkyl hydroperoxide reductase subunit C -
  MST16_RS01000 (MST16_01000) - 208919..209842 (-) 924 WP_168378962.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21506.21 Da        Isoelectric Point: 6.4819

>NTDB_id=670076 MST16_RS00975 WP_078190523.1 204902..205489(+) (ssb) [Acinetobacter sp. YH16040_T]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQGGQERYTTEIRGEQMQMLDNNRQQGEQGQGGDFGQPRFNNQQGGYNNNQNQGGYGNNSNQGGYGNNQPAQ
GNSYGNNNPGGFAPKQQPAPTPAPAAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=670076 MST16_RS00975 WP_078190523.1 204902..205489(+) (ssb) [Acinetobacter sp. YH16040_T]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGTGACCCTGAAACAAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAGTTCTCAATTGCAACGAGTGATTCATGGACTGATAAAAATACAGGTGAGCGTAAAGAGCAAACAGAATGGC
ACCGTATTGTGTTGCATAACCGTTTAGGTGAAATTGCACAGCAATATTTGCGCAAAGGTTCTAAAGTGTATATTGAAGGT
TCATTACGTACTCGTCAGTGGACAGATCAAGGCGGTCAAGAGCGTTACACGACTGAAATTCGTGGTGAACAAATGCAAAT
GCTTGACAATAATCGCCAACAAGGCGAACAAGGTCAAGGCGGTGATTTTGGTCAGCCTCGTTTTAATAACCAACAAGGTG
GTTATAACAATAACCAAAACCAAGGTGGCTACGGTAATAACTCAAACCAAGGCGGTTATGGCAATAACCAACCGGCTCAA
GGCAATAGCTATGGCAACAACAACCCAGGTGGTTTTGCGCCAAAACAACAGCCTGCACCGACACCGGCTCCTGCAGCAGC
AGATTTAGATGATGACTTACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.308

100

0.523
  ssb Vibrio cholerae strain A1552

45.96

100

0.467
  ssb Neisseria meningitidis MC58

40.415

98.974

0.4
  ssb Neisseria gonorrhoeae MS11

38

100

0.39