Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | OG822_RS25875 | Genome accession | NZ_CP109025 |
| Coordinates | 5742507..5743577 (+) | Length | 356 a.a. |
| NCBI ID | WP_329193702.1 | Uniprot ID | - |
| Organism | Streptomyces sp. NBC_00664 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 5737507..5748577
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OG822_RS25845 (OG822_25835) | - | 5738144..5738683 (+) | 540 | WP_329193713.1 | hypothetical protein | - |
| OG822_RS25850 (OG822_25840) | pdxS | 5738842..5739759 (+) | 918 | WP_030157377.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| OG822_RS25855 (OG822_25845) | pdxT | 5739759..5740349 (+) | 591 | WP_329193710.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| OG822_RS25860 (OG822_25850) | - | 5740407..5741159 (+) | 753 | WP_329193708.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| OG822_RS25865 (OG822_25855) | ruvC | 5741285..5741821 (+) | 537 | WP_329193706.1 | crossover junction endodeoxyribonuclease RuvC | - |
| OG822_RS25870 (OG822_25860) | ruvA | 5741818..5742444 (+) | 627 | WP_329193704.1 | Holliday junction branch migration protein RuvA | - |
| OG822_RS25875 (OG822_25865) | ruvB | 5742507..5743577 (+) | 1071 | WP_329193702.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| OG822_RS25880 (OG822_25870) | yajC | 5743741..5744223 (+) | 483 | WP_329193700.1 | preprotein translocase subunit YajC | - |
| OG822_RS25885 (OG822_25875) | secD | 5744377..5746188 (+) | 1812 | WP_329193698.1 | protein translocase subunit SecD | - |
| OG822_RS25890 (OG822_25880) | secF | 5746190..5747245 (+) | 1056 | WP_329375180.1 | protein translocase subunit SecF | - |
| OG822_RS25895 (OG822_25885) | - | 5747242..5747793 (+) | 552 | WP_329193697.1 | adenine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 37798.11 Da Isoelectric Point: 4.9591
>NTDB_id=669506 OG822_RS25875 WP_329193702.1 5742507..5743577(+) (ruvB) [Streptomyces sp. NBC_00664]
MNWDDESDRIVAAAADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIAA
EMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLELPPFTL
VGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVR
ADGVITREIAGTALQVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRG
RVATPAAWAHLGLVPPGQGAGGSSSGSSGQQGLFGA
MNWDDESDRIVAAAADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIAA
EMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLELPPFTL
VGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVR
ADGVITREIAGTALQVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRG
RVATPAAWAHLGLVPPGQGAGGSSSGSSGQQGLFGA
Nucleotide
Download Length: 1071 bp
>NTDB_id=669506 OG822_RS25875 WP_329193702.1 5742507..5743577(+) (ruvB) [Streptomyces sp. NBC_00664]
GTGAACTGGGACGACGAGAGCGACCGCATTGTCGCGGCGGCGGCGGACGGCGAGGACACCGCCGTCGAGGCGGCCCTGCG
CCCCAAGGACCTCGGGGAGTTCGTCGGCCAGGAGAAGGTCCGCCAGCAGCTGGACCTCGTCCTCAAGGCGGCCCGCCAGC
GCGGCGCCACCGCCGACCACGTCCTGCTCTCCGGTGCGCCCGGCCTCGGCAAGACCACCCTGTCCATGATCATCGCGGCG
GAGATGGGCGCGCCCATCCGGATCACCTCCGGCCCCGCCATCCAGCACGCCGGGGACCTCGCCGCGATCCTCTCCTCCCT
GCAGGAGGGCGAGGTGCTCTTCCTGGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGCTGTACATGGCCATGG
AGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGCCCGGGCGCGACCGCGATCCCCCTGGAGCTGCCGCCCTTCACCCTG
GTCGGCGCGACCACCCGCGCCGGGCTGCTCCCGCCGCCGCTGCGGGACCGGTTCGGCTTCACCGGGCACATGGAGTTCTA
CGCCCCCGAGGAGCTGGAACGCGTCATCCACCGCTCCGCCCGCCTCCTCGACGTGGAGATCGACACCGCCGGGGCCGCCG
AGATCGCCGGACGCTCGCGCGGCACCCCGCGCATCGCCAACCGCCTGCTGCGCCGGGTCCGGGACTACGCCCAGGTGCGG
GCCGACGGAGTGATCACCCGGGAGATCGCCGGCACCGCCCTCCAGGTGTACGAGGTGGACGCGCGCGGCCTCGACCGGCT
GGACCGGGCCGTGCTGGAGGCGCTGCTCAAGCTGTTCGGCGGCGGACCCGTAGGCCTGTCGACCCTCGCCGTCGCCGTCG
GTGAGGAACGCGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTGGTCCGCGAGGGGCTGCTGGCGCGTACCCCGCGCGGG
CGGGTCGCGACCCCCGCCGCATGGGCTCACCTGGGCCTTGTCCCGCCCGGGCAGGGAGCCGGTGGATCAAGCAGTGGATC
AAGCGGACAACAGGGCTTGTTCGGGGCGTGA
GTGAACTGGGACGACGAGAGCGACCGCATTGTCGCGGCGGCGGCGGACGGCGAGGACACCGCCGTCGAGGCGGCCCTGCG
CCCCAAGGACCTCGGGGAGTTCGTCGGCCAGGAGAAGGTCCGCCAGCAGCTGGACCTCGTCCTCAAGGCGGCCCGCCAGC
GCGGCGCCACCGCCGACCACGTCCTGCTCTCCGGTGCGCCCGGCCTCGGCAAGACCACCCTGTCCATGATCATCGCGGCG
GAGATGGGCGCGCCCATCCGGATCACCTCCGGCCCCGCCATCCAGCACGCCGGGGACCTCGCCGCGATCCTCTCCTCCCT
GCAGGAGGGCGAGGTGCTCTTCCTGGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGCTGTACATGGCCATGG
AGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGCCCGGGCGCGACCGCGATCCCCCTGGAGCTGCCGCCCTTCACCCTG
GTCGGCGCGACCACCCGCGCCGGGCTGCTCCCGCCGCCGCTGCGGGACCGGTTCGGCTTCACCGGGCACATGGAGTTCTA
CGCCCCCGAGGAGCTGGAACGCGTCATCCACCGCTCCGCCCGCCTCCTCGACGTGGAGATCGACACCGCCGGGGCCGCCG
AGATCGCCGGACGCTCGCGCGGCACCCCGCGCATCGCCAACCGCCTGCTGCGCCGGGTCCGGGACTACGCCCAGGTGCGG
GCCGACGGAGTGATCACCCGGGAGATCGCCGGCACCGCCCTCCAGGTGTACGAGGTGGACGCGCGCGGCCTCGACCGGCT
GGACCGGGCCGTGCTGGAGGCGCTGCTCAAGCTGTTCGGCGGCGGACCCGTAGGCCTGTCGACCCTCGCCGTCGCCGTCG
GTGAGGAACGCGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTGGTCCGCGAGGGGCTGCTGGCGCGTACCCCGCGCGGG
CGGGTCGCGACCCCCGCCGCATGGGCTCACCTGGGCCTTGTCCCGCCCGGGCAGGGAGCCGGTGGATCAAGCAGTGGATC
AAGCGGACAACAGGGCTTGTTCGGGGCGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.799 |
92.416 |
0.497 |
| ruvB | Streptococcus pneumoniae TIGR4 |
52.778 |
91.011 |
0.48 |
| ruvB | Streptococcus pneumoniae R6 |
52.778 |
91.011 |
0.48 |
| ruvB | Streptococcus pneumoniae D39 |
52.778 |
91.011 |
0.48 |
| ruvB | Synechocystis sp. PCC 6803 |
52.548 |
88.202 |
0.463 |
| ruvB | Helicobacter pylori 26695 |
49.843 |
89.607 |
0.447 |