Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | MQC90_RS22055 | Genome accession | NZ_CP094361 |
| Coordinates | 4193781..4194299 (-) | Length | 172 a.a. |
| NCBI ID | WP_003219228.1 | Uniprot ID | A0A063XE16 |
| Organism | Bacillus subtilis strain NCIB 3610 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4168009..4194627 | 4193781..4194299 | within | 0 |
Gene organization within MGE regions
Location: 4168009..4194627
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MQC90_RS21885 | yybN | 4168009..4168446 (+) | 438 | WP_009968442.1 | DUF2712 domain-containing protein | - |
| MQC90_RS21890 | yybM | 4168560..4169315 (+) | 756 | WP_003244187.1 | DUF2705 family protein | - |
| MQC90_RS21895 | yybL | 4169305..4170015 (+) | 711 | WP_003243512.1 | WxPxxD family membrane protein | - |
| MQC90_RS21900 | yybK | 4170012..4170767 (+) | 756 | WP_003243304.1 | DUF2705 family protein | - |
| MQC90_RS21905 | yybJ | 4170764..4171420 (+) | 657 | WP_003243153.1 | ATP-binding cassette domain-containing protein | - |
| MQC90_RS21910 | - | 4171572..4171749 (+) | 178 | Protein_4262 | MFS transporter | - |
| MQC90_RS21915 | - | 4171795..4172583 (-) | 789 | WP_003244492.1 | hypothetical protein | - |
| MQC90_RS21920 | yybH | 4172651..4173040 (-) | 390 | WP_003243451.1 | nuclear transport factor 2 family protein | - |
| MQC90_RS21925 | yybG | 4173186..4174025 (+) | 840 | WP_003244562.1 | pentapeptide repeat-containing protein | - |
| MQC90_RS21930 | yybF | 4174058..4175272 (-) | 1215 | WP_003243239.1 | MFS transporter | - |
| MQC90_RS21935 | yybE | 4175459..4176337 (+) | 879 | WP_003242958.1 | LysR family transcriptional regulator | - |
| MQC90_RS21940 | yybD | 4176351..4176794 (+) | 444 | WP_003226881.1 | GNAT family N-acetyltransferase | - |
| MQC90_RS21945 | yybC | 4176877..4177356 (+) | 480 | WP_003243923.1 | hypothetical protein | - |
| MQC90_RS21950 | - | 4177381..4177514 (-) | 134 | Protein_4270 | LysR family transcriptional regulator | - |
| MQC90_RS21955 | yybB | 4177531..4178193 (-) | 663 | WP_003226877.1 | MBL fold metallo-hydrolase | - |
| MQC90_RS21960 | yybA | 4178340..4178792 (-) | 453 | WP_003226875.1 | MarR family transcriptional regulator | - |
| MQC90_RS21965 | yyaT | 4178912..4179358 (+) | 447 | WP_003243577.1 | GNAT family N-acetyltransferase | - |
| MQC90_RS21970 | yyaS | 4179355..4179960 (+) | 606 | WP_003244154.1 | YitT family protein | - |
| MQC90_RS21975 | satA | 4180055..4180576 (-) | 522 | WP_003242546.1 | streptothricin N-acetyltransferase SatA | - |
| MQC90_RS21980 | yyaQ | 4180987..4181343 (+) | 357 | WP_003244448.1 | MmcQ/YjbR family DNA-binding protein | - |
| MQC90_RS21985 | yyaP | 4181503..4182069 (+) | 567 | WP_003243497.1 | dihydrofolate reductase family protein | - |
| MQC90_RS21990 | - | 4182311..4182473 (+) | 163 | Protein_4278 | DUF255 domain-containing protein | - |
| MQC90_RS21995 | tet(L) | 4182576..4183952 (-) | 1377 | WP_003242953.1 | tetracycline efflux MFS transporter Tet(L) | - |
| MQC90_RS22000 | yyaO | 4184301..4184540 (+) | 240 | WP_003243894.1 | DUF255 domain-containing protein | - |
| MQC90_RS22005 | yyaN | 4184691..4185107 (+) | 417 | WP_010886646.1 | MerR family transcriptional regulator | - |
| MQC90_RS22010 | yyaM | 4185104..4186021 (+) | 918 | WP_003242776.1 | EamA family transporter | - |
| MQC90_RS22015 | yyaL | 4186093..4188162 (+) | 2070 | WP_009968448.1 | thioredoxin domain-containing protein | - |
| MQC90_RS22020 | yyaK | 4188159..4189058 (-) | 900 | WP_003244361.1 | type II CAAX endopeptidase family protein | - |
| MQC90_RS22025 | yyaJ | 4189284..4190639 (+) | 1356 | WP_003243011.1 | MFS transporter | - |
| MQC90_RS22030 | maa | 4190673..4191227 (-) | 555 | WP_003242928.1 | sugar O-acetyltransferase | - |
| MQC90_RS22035 | yyaH | 4191245..4191625 (-) | 381 | WP_003244460.1 | VOC family protein | - |
| MQC90_RS22040 | ccpB | 4191681..4192616 (-) | 936 | WP_003243573.1 | transcriptional regulator CcpB | - |
| MQC90_RS22045 | xth | 4192675..4193433 (-) | 759 | WP_003243194.1 | exodeoxyribonuclease III | - |
| MQC90_RS22050 | rpsR | 4193498..4193737 (-) | 240 | WP_003219224.1 | 30S ribosomal protein S18 | - |
| MQC90_RS22055 | ssbA | 4193781..4194299 (-) | 519 | WP_003219228.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| MQC90_RS22060 | rpsF | 4194340..4194627 (-) | 288 | WP_003244064.1 | 30S ribosomal protein S6 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18742.31 Da Isoelectric Point: 4.7621
>NTDB_id=669323 MQC90_RS22055 WP_003219228.1 4193781..4194299(-) (ssbA) [Bacillus subtilis strain NCIB 3610]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=669323 MQC90_RS22055 WP_003219228.1 4193781..4194299(-) (ssbA) [Bacillus subtilis strain NCIB 3610]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.192 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
35.519 |
100 |
0.378 |