Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MRY17_RS23025 Genome accession   NZ_CP094351
Coordinates   5146676..5147191 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas orientalis strain YB-76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5141676..5152191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY17_RS23000 (MRY17_23000) - 5142164..5142919 (-) 756 WP_181283559.1 alpha/beta fold hydrolase -
  MRY17_RS23005 (MRY17_23005) - 5142909..5144018 (-) 1110 WP_243352923.1 DUF3182 family protein -
  MRY17_RS23010 (MRY17_23010) - 5144189..5145148 (-) 960 WP_243352924.1 GlxA family transcriptional regulator -
  MRY17_RS23015 (MRY17_23015) - 5145243..5145803 (+) 561 WP_243352925.1 cysteine hydrolase family protein -
  MRY17_RS23020 (MRY17_23020) tam 5145820..5146581 (-) 762 WP_243352926.1 trans-aconitate 2-methyltransferase -
  MRY17_RS23025 (MRY17_23025) ssb 5146676..5147191 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  MRY17_RS23030 (MRY17_23030) - 5147201..5148595 (-) 1395 WP_124360018.1 MFS transporter -
  MRY17_RS23035 (MRY17_23035) uvrA 5148774..5151608 (+) 2835 WP_191953582.1 excinuclease ABC subunit UvrA -
  MRY17_RS23040 (MRY17_23040) bfr 5151675..5152139 (-) 465 WP_065930320.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=669199 MRY17_RS23025 WP_003232445.1 5146676..5147191(-) (ssb) [Pseudomonas orientalis strain YB-76]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=669199 MRY17_RS23025 WP_003232445.1 5146676..5147191(-) (ssb) [Pseudomonas orientalis strain YB-76]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAAGTGGCCGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCGCGTCCACAGC
AATCGCGTCCGCAGCCAAGCCAGCAGCCTCAGCGTGAGTCGCGCCCGGCGCCACAACAGGCCGCTCCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment