Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PM1_RS26800 Genome accession   NZ_CP094343
Coordinates   6045411..6045908 (-) Length   165 a.a.
NCBI ID   WP_009617188.1    Uniprot ID   A0A127MME3
Organism   Pseudomonas sp. M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6040411..6050908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM1_RS26785 (MRY70_26785) - 6040917..6043403 (+) 2487 WP_152604430.1 TonB-dependent siderophore receptor -
  PM1_RS26790 (MRY70_26790) - 6043660..6044475 (+) 816 Protein_5294 hypothetical protein -
  PM1_RS26795 (MRY70_26795) - 6044519..6044716 (-) 198 WP_009617189.1 hypothetical protein -
  PM1_RS26800 (MRY70_26800) ssb 6045411..6045908 (-) 498 WP_009617188.1 single-stranded DNA-binding protein Machinery gene
  PM1_RS26805 (MRY70_26805) - 6045927..6047315 (-) 1389 WP_009617187.1 MFS transporter -
  PM1_RS26810 (MRY70_26810) uvrA 6047527..6050382 (+) 2856 WP_009617186.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18229.15 Da        Isoelectric Point: 5.2781

>NTDB_id=669107 PM1_RS26800 WP_009617188.1 6045411..6045908(-) (ssb) [Pseudomonas sp. M1]
MARGVNKVILVGNVGGDPETRYLPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIVAEYVRKGSQIYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPGAGGDDAPRAPREPQQRPQQAPRPAPQQQAAPAPQPAADYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=669107 PM1_RS26800 WP_009617188.1 6045411..6045908(-) (ssb) [Pseudomonas sp. M1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGCGATCCGGAAACCCGCTACCTGCCCAACGGCAA
CGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAACGTACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAAATCGTCGCCGAGTACGTGCGCAAGGGCTCGCAGATCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGACCGCTACACCACCGAGATCGTGGTAGACATCAACGG
CAACATGCAACTGCTCGGCGGCCGTCCGGGCGCCGGTGGCGACGACGCCCCGCGCGCGCCGCGCGAACCCCAGCAGCGCC
CGCAACAGGCCCCGCGCCCGGCGCCGCAACAACAGGCCGCCCCGGCCCCGCAACCGGCCGCCGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127MME3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.6
  ssb Glaesserella parasuis strain SC1401

49.727

100

0.552
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.491
  ssb Neisseria meningitidis MC58

46.023

100

0.491

Multiple sequence alignment