Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PM1_RS25665 Genome accession   NZ_CP094343
Coordinates   5799335..5800672 (+) Length   445 a.a.
NCBI ID   WP_009617580.1    Uniprot ID   A0A1A5D7F7
Organism   Pseudomonas sp. M1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5794335..5805672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM1_RS25640 (MRY70_25640) pgeF 5794528..5795256 (-) 729 WP_009617587.1 peptidoglycan editing factor PgeF -
  PM1_RS25645 (MRY70_25645) rluD 5795253..5796212 (-) 960 WP_009617586.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PM1_RS25650 (MRY70_25650) - 5796359..5797372 (+) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  PM1_RS25655 (MRY70_25655) - 5797511..5797741 (+) 231 WP_009617584.1 PP0621 family protein -
  PM1_RS25660 (MRY70_25660) pilS 5797734..5799323 (+) 1590 WP_009617582.1 ATP-binding protein Regulator
  PM1_RS25665 (MRY70_25665) pilR 5799335..5800672 (+) 1338 WP_009617580.1 sigma-54 dependent transcriptional regulator Regulator
  PM1_RS25670 (MRY70_25670) thiO 5800770..5801879 (-) 1110 WP_009617577.1 glycine oxidase ThiO -
  PM1_RS25675 (MRY70_25675) - 5802058..5802570 (+) 513 WP_009617575.1 GspH/FimT family protein -
  PM1_RS25680 (MRY70_25680) - 5802720..5803199 (+) 480 WP_009617574.1 GspH/FimT family pseudopilin -
  PM1_RS25685 (MRY70_25685) pilV 5803196..5803699 (+) 504 WP_024128151.1 type IV pilus modification protein PilV Machinery gene
  PM1_RS25690 (MRY70_25690) - 5803702..5804529 (+) 828 WP_043300181.1 PilW family protein -
  PM1_RS25695 (MRY70_25695) - 5804526..5805110 (+) 585 WP_009617569.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49524.78 Da        Isoelectric Point: 5.6352

>NTDB_id=669105 PM1_RS25665 WP_009617580.1 5799335..5800672(+) (pilR) [Pseudomonas sp. M1]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLASDSGLAAAQVSPEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPNDLRFAEATGGGESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=669105 PM1_RS25665 WP_009617580.1 5799335..5800672(+) (pilR) [Pseudomonas sp. M1]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCAAGGAATACCTGGCCCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAACCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGCGCGGAAGACGCGCCGGTGGACAACC
GCCTGCTGGGCGACTCGCCGCCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTGGCCCGGCTGATCCACGAACAGGGCCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTGAACTGCGGCGCCATCCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAATGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCC
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCAGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTGCGCGTGCTCTGCGCCACCCACAAGGACCTGGCCGCGGAAGTCGCCGCCGGCCGCTTCCGCCAAGACCTCTATT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGCTGCTCACCGAGCGCGTG
CTCAAGCGCCTGGCCAGCGACAGCGGCCTGGCCGCGGCGCAGGTCAGCCCCGAAGCCCTGGAAAAGCTCAAGAGCTACCG
CTTCCCGGGCAACGTGCGCGAACTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGAGGACGATGTCATCCAGCCCA
ACGACCTTCGTTTCGCCGAGGCCACCGGCGGCGGCGAAAGCGGCGAGGCCAGCCTGGCGCAAATCGACAATCTCGAGGAT
TACCTCGAAGAGATCGAACGCAAGCTGATCATGCAGGCCTTGGAAGAAACCCGCTGGAATCGTACCGCCGCGGCCCAGCG
ACTGGGGCTGACGTTCCGTTCGATGCGCTATCGCTTGAAGAAGCTAGGGATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D7F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.764

100

0.888
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515

Multiple sequence alignment