Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PM1_RS25685 Genome accession   NZ_CP094343
Coordinates   5803196..5803699 (+) Length   167 a.a.
NCBI ID   WP_024128151.1    Uniprot ID   -
Organism   Pseudomonas sp. M1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5798196..5808699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM1_RS25665 (MRY70_25665) pilR 5799335..5800672 (+) 1338 WP_009617580.1 sigma-54 dependent transcriptional regulator Regulator
  PM1_RS25670 (MRY70_25670) thiO 5800770..5801879 (-) 1110 WP_009617577.1 glycine oxidase ThiO -
  PM1_RS25675 (MRY70_25675) - 5802058..5802570 (+) 513 WP_009617575.1 GspH/FimT family protein -
  PM1_RS25680 (MRY70_25680) - 5802720..5803199 (+) 480 WP_009617574.1 GspH/FimT family pseudopilin -
  PM1_RS25685 (MRY70_25685) pilV 5803196..5803699 (+) 504 WP_024128151.1 type IV pilus modification protein PilV Machinery gene
  PM1_RS25690 (MRY70_25690) - 5803702..5804529 (+) 828 WP_043300181.1 PilW family protein -
  PM1_RS25695 (MRY70_25695) - 5804526..5805110 (+) 585 WP_009617569.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17763.33 Da        Isoelectric Point: 6.2060

>NTDB_id=669106 PM1_RS25685 WP_024128151.1 5803196..5803699(+) (pilV) [Pseudomonas sp. M1]
MSASKYHHMGFSLIEVLISLLLICVGILGMVALQSKAIPYTQDSVQRSSAQMLASDLMELIRSDSANVSSYVKNTGSDFP
NAPDSCVPMPDSASDRLGCWAARAKTLLPGADSLLKGDFYICKSKTPGACDASGSAVEIQIAWTSKAGECMDESSGTTCH
YRLRTGL

Nucleotide


Download         Length: 504 bp        

>NTDB_id=669106 PM1_RS25685 WP_024128151.1 5803196..5803699(+) (pilV) [Pseudomonas sp. M1]
ATGAGCGCGTCGAAATATCATCACATGGGTTTCAGCCTGATTGAAGTTCTCATCAGTCTGTTGCTGATCTGCGTAGGAAT
CCTTGGAATGGTGGCCCTTCAGAGCAAAGCCATTCCCTACACCCAGGATTCGGTCCAACGGAGCAGTGCTCAAATGTTGG
CCAGCGACCTCATGGAACTGATTCGTAGCGACTCCGCGAACGTCAGCAGCTACGTGAAGAATACCGGTAGCGACTTTCCG
AACGCCCCCGACTCTTGCGTGCCAATGCCAGATAGCGCCAGCGATCGCCTAGGCTGCTGGGCGGCAAGAGCCAAGACACT
GTTGCCTGGGGCGGATTCGCTTCTAAAAGGCGACTTCTACATTTGCAAGAGTAAAACACCGGGAGCCTGCGACGCTTCGG
GCTCAGCCGTAGAAATACAGATCGCCTGGACCAGCAAGGCAGGCGAATGCATGGACGAATCCAGCGGTACGACATGCCAT
TACCGGCTCAGGACGGGATTGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.711

100

0.515

Multiple sequence alignment