Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PM1_RS25660 Genome accession   NZ_CP094343
Coordinates   5797734..5799323 (+) Length   529 a.a.
NCBI ID   WP_009617582.1    Uniprot ID   -
Organism   Pseudomonas sp. M1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5792734..5804323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM1_RS25635 (MRY70_25635) - 5794263..5794427 (-) 165 WP_024128152.1 hypothetical protein -
  PM1_RS25640 (MRY70_25640) pgeF 5794528..5795256 (-) 729 WP_009617587.1 peptidoglycan editing factor PgeF -
  PM1_RS25645 (MRY70_25645) rluD 5795253..5796212 (-) 960 WP_009617586.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PM1_RS25650 (MRY70_25650) - 5796359..5797372 (+) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  PM1_RS25655 (MRY70_25655) - 5797511..5797741 (+) 231 WP_009617584.1 PP0621 family protein -
  PM1_RS25660 (MRY70_25660) pilS 5797734..5799323 (+) 1590 WP_009617582.1 ATP-binding protein Regulator
  PM1_RS25665 (MRY70_25665) pilR 5799335..5800672 (+) 1338 WP_009617580.1 sigma-54 dependent transcriptional regulator Regulator
  PM1_RS25670 (MRY70_25670) thiO 5800770..5801879 (-) 1110 WP_009617577.1 glycine oxidase ThiO -
  PM1_RS25675 (MRY70_25675) - 5802058..5802570 (+) 513 WP_009617575.1 GspH/FimT family protein -
  PM1_RS25680 (MRY70_25680) - 5802720..5803199 (+) 480 WP_009617574.1 GspH/FimT family pseudopilin -
  PM1_RS25685 (MRY70_25685) pilV 5803196..5803699 (+) 504 WP_024128151.1 type IV pilus modification protein PilV Machinery gene

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58445.46 Da        Isoelectric Point: 7.2738

>NTDB_id=669104 PM1_RS25660 WP_009617582.1 5797734..5799323(+) (pilS) [Pseudomonas sp. M1]
MAKAIPISGQQGQRILRLYHLYRLSIGLLLVLLISSDLDDRVLNVGQSALFHASCWSYLIVNILIAVLMPTPRQLLPIFL
LALFDILALCGLFYAAGGVPSGIGNLLVVAVGIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPTAINHYVQAGSLGA
LSFAAALLLQGLARRQQLTEHLAEERATTVANLEELNALILQRMRTGILVLDSRHRVLLANQSALGLLAQPELAGKLATE
HCPELLDSLQQWERNPSLRPPSLQAPEGGPMLQPSFIPLRRGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLQESETLDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQQLDLRQWLQRFTDEQREGLRGDQ
QIHLQLGGGEIQTRMDPSQLTQVLGNLVQNGLRYSARQNGSGQVWLNLFRDRDSDLPVLEVLDDGPGIAPEQLGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGSFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=669104 PM1_RS25660 WP_009617582.1 5797734..5799323(+) (pilS) [Pseudomonas sp. M1]
ATGGCTAAGGCCATCCCCATCAGCGGCCAGCAGGGGCAGCGCATCCTCCGCCTGTACCACCTGTACCGCCTGAGCATCGG
CCTGCTGCTGGTGCTGCTGATTTCCAGCGACCTCGACGACCGCGTGCTCAACGTCGGCCAGTCGGCGCTGTTCCATGCCA
GCTGCTGGAGCTACCTGATCGTCAACATCCTGATCGCCGTGCTGATGCCGACGCCGCGCCAGTTGCTGCCGATCTTCCTC
CTGGCGCTGTTCGACATCCTCGCGCTGTGCGGCCTGTTCTACGCCGCCGGCGGCGTGCCCAGCGGCATCGGCAACCTGCT
GGTGGTGGCGGTGGGCATCGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCGATCGGCA
TGATCTACCTGACCTTCTACCTCAGCCTCAGCCAGCCCACGGCGATCAACCACTACGTCCAGGCCGGCAGCCTCGGCGCC
CTGAGCTTCGCCGCCGCGCTGCTGCTGCAGGGCCTGGCGCGGCGCCAGCAACTCACCGAGCACCTGGCCGAGGAACGCGC
CACCACCGTGGCCAACCTCGAAGAACTCAACGCCCTCATCCTGCAGCGCATGCGCACCGGCATCCTGGTACTGGACAGCC
GGCACCGCGTGCTGCTGGCCAACCAGAGCGCCCTGGGCCTGCTGGCCCAGCCGGAACTGGCGGGCAAGCTCGCCACCGAG
CATTGCCCGGAGCTGCTCGACAGCCTGCAGCAGTGGGAACGCAACCCCTCGCTGCGCCCGCCCAGCCTGCAGGCGCCCGA
AGGCGGCCCCATGCTGCAGCCGAGCTTCATCCCGCTGCGCCGCGGCGAGGAACAGCACACCCTGGTGTTCCTCGAAGACA
TCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCGGCCCTGGGCCGGCTCACCGCCGGCATCGCCCACGAGATC
CGCAACCCGCTGGGCGCCATCAGCCACGCCGCGCAGCTGCTGCAGGAGTCCGAAACGCTCGATGCCCCCGACCGGCGCCT
GACGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTGATCGAGAACGTCCTGCAACTGTCGCGGCGGCGCCAGG
CCGAGCCGCAACAGCTGGACCTCAGGCAGTGGCTGCAACGCTTCACCGACGAGCAGCGCGAAGGCCTGCGCGGCGACCAG
CAGATCCACCTGCAACTGGGCGGCGGCGAGATCCAGACGCGCATGGACCCCAGCCAACTCACCCAGGTGCTGGGTAACCT
GGTGCAGAATGGGTTACGGTACAGTGCCCGGCAGAACGGCAGCGGCCAGGTGTGGTTGAACCTGTTCCGCGACCGGGACA
GCGACCTGCCGGTGCTGGAGGTGCTCGACGACGGCCCCGGCATCGCCCCGGAGCAGCTGGGCAAGCTGTTCGAACCCTTC
TTCACCACCGAGAGCAAGGGCACCGGGCTGGGCCTGTACATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCGCATCGA
CTTCAAGAACCGCGACGAAGGCGGTGGCAGCTTCCGCATCACCTTCGCCCACCCGCGCAAGCAGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

73.485

99.811

0.733

Multiple sequence alignment