Detailed information NTG0669098

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PM1_RS20770
• Genome accession: NZ_CP094343
• Coordinates: 4731934..4734153 (-)
• Length: 739 a.a.
• NCBI ID: WP_009621396.1
• Uniprot ID: -
• Organism: Pseudomonas sp. M1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4726934..4739153

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PM1_RS20735 (MRY70_20735)	murB	4727297..4728316 (-)	1020	WP_009621410.1	UDP-N-acetylmuramate dehydrogenase	-
PM1_RS20740 (MRY70_20740)	-	4728313..4728774 (-)	462	WP_009621408.1	low molecular weight protein-tyrosine-phosphatase	-
PM1_RS20745 (MRY70_20745)	kdsB	4728774..4729538 (-)	765	WP_009621406.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PM1_RS20750 (MRY70_20750)	-	4729559..4729744 (-)	186	WP_009621404.1	Trm112 family protein	-
PM1_RS20755 (MRY70_20755)	lpxK	4729785..4730783 (-)	999	WP_009621402.1	tetraacyldisaccharide 4'-kinase	-
PM1_RS20760 (MRY70_20760)	-	4730783..4731229 (-)	447	WP_009621400.1	biopolymer transporter ExbD	-
PM1_RS20765 (MRY70_20765)	exbB	4731226..4731861 (-)	636	WP_009621398.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PM1_RS20770 (MRY70_20770)	comA	4731934..4734153 (-)	2220	WP_009621396.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PM1_RS20775 (MRY70_20775)	-	4734278..4734808 (+)	531	WP_009621394.1	DUF2062 domain-containing protein	-
PM1_RS20780 (MRY70_20780)	-	4735463..4736713 (-)	1251	WP_009621392.1	lipoprotein-releasing ABC transporter permease subunit	-
PM1_RS20785 (MRY70_20785)	lolD	4736730..4737413 (-)	684	WP_009621390.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
PM1_RS20790 (MRY70_20790)	-	4737406..4738659 (-)	1254	WP_009621388.1	lipoprotein-releasing ABC transporter permease subunit	-

Sequence

Protein

• Length: 739 a.a.
• Molecular weight: 79098.45 Da
• Isoelectric Point: 8.0687

>NTDB_id=669098 PM1_RS20770 WP_009621396.1 4731934..4734153(-) (comA) [Pseudomonas sp. M1]
MRTGMMALACGLLLLRFLPQLPPLAALLPLVGMALLCLYRRHHAVALFLLGFAWACLFAHDSWEGRLAPELDGRTLWLEG
QVAGLPAAADGIVRFELEDVQARLDLPGRIRVSWYGGPEVRAGERWRLAVTLRRPHGLANDFGFDYEAWLAADGIGATGS
VKDGRRLAEATGPMAWREDWKDRLLAVDARERNAYLVALVLGDGSGLGRDDWDMLQDTGTLHLMVISGSHISLLGGLLYA
LVAGLARLGAWPARVPWLPCACAAALAGAWGYGWIAGLQVPALRACLMLSMVLLWRLHFRRQGVWLPLLGALLVVLLVDP
LVSLTPGFWLSFAAVALLVYGFAGRLGRGAGWLAWGRAQWLMALGLAPVLLALGLPLSPAGALANLIAVPCVELLVVPLA
LVGSLLLWLPAVGEGLLWLAGGVLDVLLGLLGRLSLYSPAWHPMAPPAWSIALALFGALLCLAPAGLPLRPLGLALLLPM
FWPHSTTPPHGHAEVRVLDVGQGLSVLIRTRQHTWLYDAGPRRGDFDLGEVAVLPTLRGLGVERLDVLLLSHADNDHAGG
ARSVSAAMPVTRIISGEPGRLPGSLPADPCGNEAWQLDGVRFSTWQWPGAMDSNGRSCVLHVEAGGESLLLTGDLPAAGE
VAWLAAHPGLGADWLLAGHHGSRSASSAAFVRQLAPRAALVSRSRHNAHGHPSSEVLQRFAEQGTKVHDVAREGALRLLL
GQRGTLRGVRENAGFWREK

Nucleotide

• Length: 2220 bp

>NTDB_id=669098 PM1_RS20770 WP_009621396.1 4731934..4734153(-) (comA) [Pseudomonas sp. M1]
GTGCGCACAGGGATGATGGCGCTGGCCTGCGGCCTGTTGCTGCTGCGTTTCCTGCCCCAGTTGCCACCCCTGGCAGCCTT
GCTGCCATTGGTCGGAATGGCGCTGCTGTGCCTGTATCGGCGACATCACGCGGTGGCGCTCTTCCTGCTCGGCTTCGCCT
GGGCCTGCCTGTTCGCCCATGACTCGTGGGAAGGGCGCCTGGCTCCCGAACTGGACGGGCGGACGCTGTGGCTGGAAGGG
CAGGTTGCCGGCCTGCCGGCTGCCGCGGATGGCATCGTCCGCTTCGAGCTGGAGGACGTCCAGGCGCGCCTGGACCTGCC
CGGGCGCATCCGCGTGTCCTGGTATGGCGGCCCGGAGGTGCGGGCCGGGGAACGCTGGCGCCTGGCCGTGACCCTGCGCC
GTCCCCATGGCCTGGCCAACGATTTCGGCTTCGACTACGAGGCCTGGCTGGCGGCCGACGGCATAGGCGCCACCGGCAGC
GTCAAGGATGGCCGGCGCCTGGCCGAGGCCACGGGACCGATGGCTTGGCGCGAAGACTGGAAGGACCGGCTGCTGGCGGT
GGATGCCCGGGAACGCAACGCCTACCTGGTGGCCCTGGTCCTAGGCGACGGCAGCGGCCTGGGCCGGGACGACTGGGACA
TGCTGCAGGACACCGGCACCCTGCACCTGATGGTGATCTCCGGCTCGCACATCTCCCTGCTGGGCGGCTTGCTCTACGCC
CTGGTGGCGGGTCTGGCGCGGCTGGGAGCCTGGCCGGCGCGCGTGCCCTGGCTGCCCTGCGCCTGTGCCGCCGCACTGGC
TGGCGCCTGGGGCTATGGCTGGATCGCCGGGCTGCAGGTGCCGGCATTGCGCGCCTGCCTGATGCTCAGCATGGTGCTGC
TGTGGCGCCTGCACTTTCGTCGCCAGGGCGTCTGGCTGCCGCTGCTCGGCGCTCTGCTGGTGGTGCTGCTGGTCGATCCG
CTGGTCAGCCTGACGCCCGGCTTCTGGCTGTCCTTCGCCGCCGTGGCGCTGCTCGTCTACGGCTTCGCCGGGCGCCTGGG
GCGGGGGGCCGGCTGGCTGGCCTGGGGGCGCGCGCAGTGGCTCATGGCCCTCGGGCTGGCACCGGTGTTGCTGGCCCTGG
GCCTGCCGCTGAGTCCCGCCGGCGCGCTGGCGAACCTGATCGCGGTGCCCTGTGTCGAGTTGCTGGTGGTGCCCCTGGCG
CTGGTCGGCAGCCTGCTGCTGTGGCTGCCGGCGGTGGGCGAGGGGCTGCTATGGCTGGCCGGTGGCGTGCTCGACGTGCT
GCTGGGCCTGCTCGGGCGCCTGTCGCTGTATTCCCCGGCCTGGCATCCCATGGCACCGCCGGCCTGGAGCATCGCCCTGG
CCCTGTTCGGCGCGCTGCTGTGCCTGGCGCCGGCCGGGCTGCCGCTGCGCCCGCTGGGCCTGGCGTTGCTGTTGCCGATG
TTCTGGCCGCATTCCACTACGCCGCCCCATGGCCATGCCGAAGTGCGGGTGCTGGACGTGGGCCAGGGGCTGTCCGTGCT
GATCCGCACCCGCCAGCACACCTGGCTGTACGACGCCGGACCGCGCCGGGGCGATTTCGACCTCGGCGAGGTGGCGGTGC
TGCCGACTCTTCGTGGCCTGGGCGTCGAACGCCTGGACGTGCTGCTGCTCAGCCATGCCGACAACGACCACGCCGGCGGT
GCCCGCTCGGTGTCGGCGGCCATGCCGGTGACGCGGATCATCAGCGGCGAGCCCGGGCGCCTGCCGGGCAGCCTACCTGC
CGATCCTTGCGGCAACGAAGCGTGGCAGCTGGACGGCGTGCGCTTCTCCACCTGGCAGTGGCCCGGCGCGATGGACAGCA
ACGGCCGCTCCTGCGTGCTGCACGTCGAGGCCGGCGGCGAGAGCCTGCTGCTCACCGGCGACCTGCCGGCCGCAGGCGAG
GTCGCCTGGCTAGCCGCCCATCCTGGGCTCGGCGCCGACTGGCTGCTGGCCGGCCACCATGGCAGCCGCAGCGCCTCTTC
CGCGGCCTTCGTCAGGCAACTGGCGCCCCGAGCGGCGCTGGTTTCCCGCTCGCGGCACAACGCCCATGGCCATCCGTCCA
GCGAGGTGCTGCAACGCTTTGCCGAGCAGGGGACGAAGGTGCACGATGTGGCCCGGGAGGGCGCCCTGCGCCTGCTCCTG
GGCCAGCGTGGAACGCTGCGCGGCGTGCGCGAAAATGCCGGATTCTGGAGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (499-681)

• Competence protein (Competence) (199-462)

• Domain of unknown function (DUF4131) (DUF4131) (20-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	57.083	97.429	0.556
comA	Ralstonia pseudosolanacearum GMI1000	35.31	100	0.363