Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PM1_RS20765 Genome accession   NZ_CP094343
Coordinates   4731226..4731861 (-) Length   211 a.a.
NCBI ID   WP_009621398.1    Uniprot ID   A0A1A5CYN3
Organism   Pseudomonas sp. M1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4726226..4736861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM1_RS20735 (MRY70_20735) murB 4727297..4728316 (-) 1020 WP_009621410.1 UDP-N-acetylmuramate dehydrogenase -
  PM1_RS20740 (MRY70_20740) - 4728313..4728774 (-) 462 WP_009621408.1 low molecular weight protein-tyrosine-phosphatase -
  PM1_RS20745 (MRY70_20745) kdsB 4728774..4729538 (-) 765 WP_009621406.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PM1_RS20750 (MRY70_20750) - 4729559..4729744 (-) 186 WP_009621404.1 Trm112 family protein -
  PM1_RS20755 (MRY70_20755) lpxK 4729785..4730783 (-) 999 WP_009621402.1 tetraacyldisaccharide 4'-kinase -
  PM1_RS20760 (MRY70_20760) - 4730783..4731229 (-) 447 WP_009621400.1 biopolymer transporter ExbD -
  PM1_RS20765 (MRY70_20765) exbB 4731226..4731861 (-) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PM1_RS20770 (MRY70_20770) comA 4731934..4734153 (-) 2220 WP_009621396.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PM1_RS20775 (MRY70_20775) - 4734278..4734808 (+) 531 WP_009621394.1 DUF2062 domain-containing protein -
  PM1_RS20780 (MRY70_20780) - 4735463..4736713 (-) 1251 WP_009621392.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22919.12 Da        Isoelectric Point: 8.0527

>NTDB_id=669097 PM1_RS20765 WP_009621398.1 4731226..4731861(-) (exbB) [Pseudomonas sp. M1]
MWELVKAGGWMMLPIILSSIAATAIVAERLWTLRRSRIAPPQLLGQVWKQIKDKKLNSQALKELKASSPLGEVLAAGLVN
SKHGREIMKECIEEAAGRVIHEMERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPQLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=669097 PM1_RS20765 WP_009621398.1 4731226..4731861(-) (exbB) [Pseudomonas sp. M1]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCATCGCCCCGCCGCAGCTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGCTGAACAGCCAGGCGCTCAAGGAGCTCAAGGCGTCTTCCCCGCTGGGCGAGGTGCTCGCCGCCGGCCTGGTCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGGCCGGGTGATCCACGAGATGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCCCCGCAGCTCGCCGGCGGCATCTCCAAGGCCCTGGTGACCACCGCCTCC
GGCCTGATCGTGGCCATCCCGGCCGTGTTCTTCCATCGCTACCTGCTGCGCCGCGTCGATGAGCTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGCGACCGCGAGGTCGACCTCTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5CYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806

Multiple sequence alignment