Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MRS49_RS01695 Genome accession   NZ_CP094294
Coordinates   346416..346751 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 341416..351751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRS49_RS01675 gcvT 342023..343123 (-) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -
  MRS49_RS01680 - 343546..345216 (+) 1671 WP_032874031.1 SNF2-related protein -
  MRS49_RS01685 - 345238..346032 (+) 795 WP_007612541.1 YqhG family protein -
  MRS49_RS01690 sinI 346209..346382 (+) 174 WP_032874029.1 anti-repressor SinI family protein Regulator
  MRS49_RS01695 sinR 346416..346751 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  MRS49_RS01700 - 346799..347584 (-) 786 WP_032874027.1 TasA family protein -
  MRS49_RS01705 - 347649..348233 (-) 585 WP_032874025.1 signal peptidase I -
  MRS49_RS01710 tapA 348205..348876 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  MRS49_RS01715 - 349135..349464 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  MRS49_RS01720 - 349505..349684 (-) 180 WP_022552966.1 YqzE family protein -
  MRS49_RS01725 comGG 349741..350118 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  MRS49_RS01730 comGF 350119..350619 (-) 501 WP_223204419.1 competence type IV pilus minor pilin ComGF -
  MRS49_RS01735 comGE 350528..350842 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  MRS49_RS01740 comGD 350826..351263 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  MRS49_RS01745 comGC 351253..351519 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=668629 MRS49_RS01695 WP_003153104.1 346416..346751(+) (sinR) [Bacillus velezensis strain AP3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=668629 MRS49_RS01695 WP_003153104.1 346416..346751(+) (sinR) [Bacillus velezensis strain AP3]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment