Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB17_RS41565 Genome accession   NZ_CP108985
Coordinates   9231412..9231630 (+) Length   72 a.a.
NCBI ID   WP_330480020.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00724     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9226412..9236630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB17_RS41545 (OHB17_41665) - 9226708..9227838 (+) 1131 WP_330480024.1 hypothetical protein -
  OHB17_RS41550 (OHB17_41670) - 9227866..9229011 (+) 1146 WP_330480023.1 hypothetical protein -
  OHB17_RS41555 (OHB17_41675) - 9228911..9230083 (-) 1173 WP_330480022.1 helix-turn-helix transcriptional regulator -
  OHB17_RS41560 (OHB17_41680) - 9231170..9231415 (+) 246 WP_330480021.1 hypothetical protein -
  OHB17_RS41565 (OHB17_41685) dinR/lexA 9231412..9231630 (+) 219 WP_330480020.1 hypothetical protein Regulator
  OHB17_RS41570 (OHB17_41690) - 9231666..9232541 (-) 876 WP_330480019.1 hypothetical protein -
  OHB17_RS41575 (OHB17_41695) - 9232855..9233193 (+) 339 WP_330480018.1 hypothetical protein -
  OHB17_RS41580 (OHB17_41700) mobF 9233228..9234163 (+) 936 Protein_8223 MobF family relaxase -
  OHB17_RS41585 (OHB17_41710) - 9234577..9236400 (+) 1824 WP_330480017.1 hypothetical protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7824.88 Da        Isoelectric Point: 10.7460

>NTDB_id=668632 OHB17_RS41565 WP_330480020.1 9231412..9231630(+) (dinR/lexA) [Streptomyces sp. NBC_00724]
MSADSLTARQEAVLRAIRDVIADTGDAPTIREIGQRVGLSSPGSVAYQLGRLENLGLISRSERRWRSCRLAG

Nucleotide


Download         Length: 219 bp        

>NTDB_id=668632 OHB17_RS41565 WP_330480020.1 9231412..9231630(+) (dinR/lexA) [Streptomyces sp. NBC_00724]
ATGAGCGCCGACAGCCTGACCGCTCGGCAGGAGGCCGTCCTGCGGGCGATCCGGGACGTCATTGCGGACACCGGAGACGC
TCCCACAATTCGGGAGATCGGCCAGCGCGTCGGACTATCCAGCCCCGGCTCGGTCGCCTACCAGCTCGGCCGGCTGGAGA
ACCTCGGGCTGATCAGCCGCAGCGAACGCCGCTGGCGTTCCTGCCGACTCGCCGGGTAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

39.394

91.667

0.361

Multiple sequence alignment