Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PBDP_RS26620 Genome accession   NZ_AP014703
Coordinates   6078285..6078800 (-) Length   171 a.a.
NCBI ID   WP_024778338.1    Uniprot ID   A0A0B1YWX5
Organism   Pseudomonas sp. St290     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6073285..6083800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBDP_RS26605 (PBDP_5258) - 6074436..6076361 (+) 1926 WP_212801537.1 MAC/perforin domain-containing protein -
  PBDP_RS26610 (PBDP_5259) - 6076548..6077402 (+) 855 WP_212801538.1 hypothetical protein -
  PBDP_RS26615 (PBDP_5260) - 6077531..6078157 (+) 627 WP_176689036.1 hypothetical protein -
  PBDP_RS26620 (PBDP_5261) ssb 6078285..6078800 (-) 516 WP_024778338.1 single-stranded DNA-binding protein Machinery gene
  PBDP_RS26625 (PBDP_5262) - 6078810..6080207 (-) 1398 WP_109756411.1 MFS transporter -
  PBDP_RS26630 (PBDP_5263) uvrA 6080387..6083221 (+) 2835 WP_109756410.1 excinuclease ABC subunit UvrA -
  PBDP_RS26635 (PBDP_5264) bfr 6083293..6083757 (-) 465 WP_014340470.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19113.27 Da        Isoelectric Point: 5.9455

>NTDB_id=66855 PBDP_RS26620 WP_024778338.1 6078285..6078800(-) (ssb) [Pseudomonas sp. St290]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPRQQAPRPQSAPQPQRERPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=66855 PBDP_RS26620 WP_024778338.1 6078285..6078800(-) (ssb) [Pseudomonas sp. St290]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCCAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGTGGCCGTCCACAGGGCGACCAGCAACAAGGTGGCAACAACTACCAGCAGTCGGCTCCGCGTCAGC
AGGCGCCTCGTCCGCAGTCCGCTCCACAGCCACAACGCGAACGCCCGGCCCCACAACAGGCCGCGCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YWX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.593

100

0.602
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.515
  ssb Neisseria meningitidis MC58

47.486

100

0.497
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.491

Multiple sequence alignment