Detailed information NTG0066846

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PBDP_RS21205
• Genome accession: NZ_AP014703
• Coordinates: 4888134..4890380 (-)
• Length: 748 a.a.
• NCBI ID: WP_212801281.1
• Uniprot ID: -
• Organism: Pseudomonas sp. St290
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4883134..4895380

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PBDP_RS21170 (PBDP_4194)	murB	4883519..4884538 (-)	1020	WP_109754396.1	UDP-N-acetylmuramate dehydrogenase	-
PBDP_RS21175 (PBDP_4195)	-	4884535..4884999 (-)	465	WP_109754397.1	low molecular weight protein-tyrosine-phosphatase	-
PBDP_RS21180 (PBDP_4196)	kdsB	4884999..4885763 (-)	765	WP_212801279.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PBDP_RS21185 (PBDP_4197)	-	4885760..4885945 (-)	186	WP_003179363.1	Trm112 family protein	-
PBDP_RS21190 (PBDP_4198)	lpxK	4885968..4886978 (-)	1011	WP_212801280.1	tetraacyldisaccharide 4'-kinase	-
PBDP_RS21195 (PBDP_4199)	-	4886978..4887406 (-)	429	WP_013694002.1	biopolymer transporter ExbD	-
PBDP_RS21200 (PBDP_4200)	exbB	4887403..4888038 (-)	636	WP_162893858.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PBDP_RS21205 (PBDP_4201)	comA	4888134..4890380 (-)	2247	WP_212801281.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PBDP_RS21210 (PBDP_4202)	-	4890525..4891040 (+)	516	WP_046063671.1	DUF2062 domain-containing protein	-
PBDP_RS21215 (PBDP_4203)	-	4891185..4891964 (-)	780	WP_072347169.1	ABC transporter permease	-
PBDP_RS21220 (PBDP_4204)	-	4891967..4892899 (-)	933	WP_109754403.1	ABC transporter ATP-binding protein	-
PBDP_RS21225 (PBDP_4205)	-	4893036..4893659 (-)	624	WP_109754529.1	glutathione S-transferase	-
PBDP_RS21230 (PBDP_4206)	-	4893704..4894363 (-)	660	WP_109754404.1	transglutaminase family protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81075.17 Da
• Isoelectric Point: 9.9301

>NTDB_id=66846 PBDP_RS21205 WP_212801281.1 4888134..4890380(-) (comA) [Pseudomonas sp. St290]
MRTGLVALALGLLAPIFLPALPPLWLIAAMPVVALMALPFRTYPLGFFLFGLAWACLSAQFALDDRLSVALDGETRWVEG
RVVGLPQQGDGVVRFELADAHSRRTRLPTTLRLAWFGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYSAWLLSRGIGATG
TVKDGRLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLTREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPAGLAWLPWACALAFCAALGYGLLAGFEVPVRRACTMIGLVLLWRLRFKQPDPWWAWLLAFAGVLVFDPL
ANLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPSAL
LGTALLPVPLIGEGLLWIAGGLLDLLFKGLTLVAGRMPAWVPAAVPNWALGIAVLGAFLLLLPKGVPLRVLGWPMVLLMV
FPPREHLPPGQAEIWQLDVGQGLAVLVRTRRHTLLYDAGPRFGEADVGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
PAVRNGLPTREVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDIHAE
RALLDEALALPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLQL
GAFELPRTEAGHRRYWRDRPTVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=66846 PBDP_RS21205 WP_212801281.1 4888134..4890380(-) (comA) [Pseudomonas sp. St290]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTACCGGCACTGCCACCGTTGTGGCTGAT
TGCAGCCATGCCGGTAGTGGCATTGATGGCGTTGCCGTTTCGAACCTATCCGCTGGGTTTCTTCCTGTTCGGGCTGGCCT
GGGCCTGTCTGTCGGCGCAGTTTGCGCTGGACGATCGGTTATCCGTCGCGCTCGATGGAGAAACCCGTTGGGTCGAGGGG
CGCGTCGTCGGTTTGCCGCAACAGGGCGATGGCGTGGTGCGTTTCGAACTGGCTGATGCCCATTCACGTCGTACCCGGCT
ACCGACGACACTGCGTCTCGCGTGGTTCGGTGGCCCGCCGGTCAACAGCGGCGAGCGCTGGCGATTGGCGGTGAAACTCA
AGCGACCCGCCGGGTTGCTGAACCCACACGGCTTCGATTATTCAGCCTGGTTGTTGAGTCGCGGTATCGGCGCGACCGGT
ACGGTCAAGGACGGCCGTCTTTTGCAGGCGGCCCGGGGCGCCTGGCGGGATGAGGTGCGCCAGGCGCTGGCACAGGTCGA
CGCCCACGGCCGCTCCGGTGCGCTGGCGGCGTTGGTTCTGGGCGACGGCGGCGGGCTGACTCGCGAAGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTTGCCGGCCTGGTGTACCTGTTG
GTGGCTGGCGCGGCGCGCTATGGCCTGTGGCCGGCAGGTCTGGCGTGGTTGCCTTGGGCCTGCGCGCTGGCCTTCTGCGC
CGCCCTGGGCTACGGCTTGCTCGCCGGGTTCGAGGTACCGGTGCGGCGGGCCTGCACGATGATCGGCCTGGTGCTGTTGT
GGCGCTTGCGCTTCAAGCAGCCAGATCCGTGGTGGGCATGGCTGCTGGCCTTCGCCGGAGTGCTGGTGTTCGACCCGCTG
GCCAACCTGCGGCCAGGGTTCTGGTTATCGTTTGCGGCTGTCGCCATCTTGATGTTCACCTTTGGCGGTCGCCTGGGACC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTCGTCGCGGTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGGT
TGCCGGTCAGTCTCAGCGGGCCGCTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTCTTGCCGTCGGCGCTG
CTCGGCACGGCGTTGTTGCCGGTCCCTCTCATTGGCGAAGGACTGCTGTGGATCGCCGGCGGACTGCTCGATCTGCTGTT
CAAGGGGCTGACGCTGGTCGCCGGACGAATGCCGGCCTGGGTCCCGGCCGCAGTCCCGAACTGGGCCCTGGGTATCGCCG
TTCTCGGCGCTTTTCTGCTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCAATGGTGTTGCTGATGGTT
TTTCCACCGCGAGAACACCTGCCGCCAGGGCAAGCCGAGATCTGGCAACTGGATGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGACGGCACACCCTGCTATACGACGCCGGGCCGCGTTTTGGCGAGGCCGATGTGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAACTGGGGGTTCGAGGCTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGTGCC
CCGGCCGTACGCAACGGGCTGCCGACGAGGGAAGTGATCAGCGGCGATCCCGATGCGCTGCCCGCCGAGTTGCTGGCCGG
GCCCTGCGACAGTGGCCGACGCTGGGAATGGGACGGAGTCGGGTTCGAGCTGTGGCGATGGGCCTCTGCCGTCGAAAGCA
ACCAGAAATCCTGTGTCTTGCTGGTGGAGGCCGGCGGTGAACGCTTGCTGCTGACCGGCGATATCGACATCCATGCCGAA
CGCGCCTTGCTCGACGAGGCCCTGGCACTACCGATCCAGTGGCTGGCCGCGCCTCACCATGGCAGCCGCAGTTCGTCGTC
GATGGCGCTGCTGTCACGTCTCAAGCCGCATTCGGTGTTGATTTCCCGAGGGCAGGGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCCCGCTATCGACGCTCGGGCCTGGCGATCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGGGCTTTCGAGCTGCCGCGCACCGAGGCCGGACACCGACGTTACTGGCGCGATCGGCCAACAGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.53	95.856	0.58
comA	Ralstonia pseudosolanacearum GMI1000	32.586	100	0.369