Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PBDP_RS21200 Genome accession   NZ_AP014703
Coordinates   4887403..4888038 (-) Length   211 a.a.
NCBI ID   WP_162893858.1    Uniprot ID   -
Organism   Pseudomonas sp. St290     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4882403..4893038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBDP_RS21165 (PBDP_4193) - 4882782..4883252 (-) 471 WP_109754395.1 (2Fe-2S)-binding protein -
  PBDP_RS21170 (PBDP_4194) murB 4883519..4884538 (-) 1020 WP_109754396.1 UDP-N-acetylmuramate dehydrogenase -
  PBDP_RS21175 (PBDP_4195) - 4884535..4884999 (-) 465 WP_109754397.1 low molecular weight protein-tyrosine-phosphatase -
  PBDP_RS21180 (PBDP_4196) kdsB 4884999..4885763 (-) 765 WP_212801279.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PBDP_RS21185 (PBDP_4197) - 4885760..4885945 (-) 186 WP_003179363.1 Trm112 family protein -
  PBDP_RS21190 (PBDP_4198) lpxK 4885968..4886978 (-) 1011 WP_212801280.1 tetraacyldisaccharide 4'-kinase -
  PBDP_RS21195 (PBDP_4199) - 4886978..4887406 (-) 429 WP_013694002.1 biopolymer transporter ExbD -
  PBDP_RS21200 (PBDP_4200) exbB 4887403..4888038 (-) 636 WP_162893858.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PBDP_RS21205 (PBDP_4201) comA 4888134..4890380 (-) 2247 WP_212801281.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PBDP_RS21210 (PBDP_4202) - 4890525..4891040 (+) 516 WP_046063671.1 DUF2062 domain-containing protein -
  PBDP_RS21215 (PBDP_4203) - 4891185..4891964 (-) 780 WP_072347169.1 ABC transporter permease -
  PBDP_RS21220 (PBDP_4204) - 4891967..4892899 (-) 933 WP_109754403.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.98 Da        Isoelectric Point: 7.3613

>NTDB_id=66845 PBDP_RS21200 WP_162893858.1 4887403..4888038(-) (exbB) [Pseudomonas sp. St290]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGDKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=66845 PBDP_RS21200 WP_162893858.1 4887403..4888038(-) (exbB) [Pseudomonas sp. St290]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCGTTGGGCGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCTGCCGCCCGGGTCATCCATGAACTGGAACGCTACAT
CAATACCCTGGGAACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACCGTGTTGGGCATGATCGACATCTTCA
GTGCGTTTACCGGCTCGGGCATGACCACCAACGCCGCGGTACTGGCGGGGGGGATTTCCAAGGCCCTGATCACCACTGCC
GCCGGCCTGATGGTGGGTATTCCGGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTGGACGAACTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAAGGTGACCGTGATGTGGACCTGGCTGGGGACAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844

Multiple sequence alignment