Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MOW14_RS14195 Genome accession   NZ_CP094258
Coordinates   2966743..2967069 (-) Length   108 a.a.
NCBI ID   WP_242898148.1    Uniprot ID   -
Organism   Acinetobacter indicus strain BDT201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2961743..2972069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW14_RS14175 (MOW14_14175) dmeF 2962182..2963189 (-) 1008 WP_242898147.1 CDF family Co(II)/Ni(II) efflux transporter DmeF -
  MOW14_RS14180 (MOW14_14180) - 2963244..2963510 (+) 267 WP_005181098.1 metal/formaldehyde-sensitive transcriptional repressor -
  MOW14_RS14185 (MOW14_14185) - 2963650..2964792 (+) 1143 WP_075175269.1 MFS transporter -
  MOW14_RS14190 (MOW14_14190) - 2964910..2965245 (-) 336 WP_005181102.1 DUF1622 domain-containing protein -
  MOW14_RS14195 (MOW14_14195) ssb 2966743..2967069 (-) 327 WP_242898148.1 single-stranded DNA-binding protein Machinery gene
  MOW14_RS14200 (MOW14_14200) - 2967324..2969753 (-) 2430 WP_242898149.1 DUF927 domain-containing protein -
  MOW14_RS14205 (MOW14_14205) - 2969856..2970074 (-) 219 WP_168400211.1 helix-turn-helix domain-containing protein -
  MOW14_RS14210 (MOW14_14210) - 2970079..2970675 (-) 597 WP_242898150.1 hypothetical protein -
  MOW14_RS14215 (MOW14_14215) - 2970679..2970915 (-) 237 WP_242898151.1 AlpA family transcriptional regulator -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12190.79 Da        Isoelectric Point: 10.2754

>NTDB_id=668444 MOW14_RS14195 WP_242898148.1 2966743..2967069(-) (ssb) [Acinetobacter indicus strain BDT201]
MPNVNKVTVMGVLGRDPETKQFPNGGSVTNFSVATTDHWKDKTTGERKEATEWHRISTNNRLAEIASKYLKKGSKVYIEG
SLRTRKWKDQSGADREVTEIKADVLQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=668444 MOW14_RS14195 WP_242898148.1 2966743..2967069(-) (ssb) [Acinetobacter indicus strain BDT201]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTATTAGGCCGTGACCCTGAAACAAAACAATTTCCCAACGGCGGTAG
CGTTACCAATTTTAGCGTTGCAACTACTGACCACTGGAAAGACAAGACCACAGGCGAGCGCAAAGAGGCTACAGAATGGC
ACAGAATCAGCACCAACAACCGATTGGCAGAGATTGCTAGTAAGTACCTCAAGAAAGGCAGCAAGGTTTATATTGAGGGC
AGCTTGCGTACAAGGAAGTGGAAAGACCAAAGCGGTGCAGATCGGGAAGTCACAGAGATAAAAGCCGATGTTCTGCAATT
GCTGTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

59.259

100

0.593
  ssb Vibrio cholerae strain A1552

53.636

100

0.546
  ssb Neisseria meningitidis MC58

48.113

98.148

0.472
  ssb Neisseria gonorrhoeae MS11

48.113

98.148

0.472

Multiple sequence alignment