Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MOW12_RS13875 Genome accession   NZ_CP094254
Coordinates   2889912..2890478 (-) Length   188 a.a.
NCBI ID   WP_075175360.1    Uniprot ID   A0A6C0XYQ8
Organism   Acinetobacter indicus strain BDT2076     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2867823..2889760 2889912..2890478 flank 152


Gene organization within MGE regions


Location: 2867823..2890478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW12_RS13785 (MOW12_13785) - 2867823..2870831 (+) 3009 WP_242911842.1 NERD domain-containing protein -
  MOW12_RS13790 (MOW12_13790) - 2870822..2871790 (-) 969 WP_012308653.1 IS30 family transposase -
  MOW12_RS13795 (MOW12_13795) - 2872140..2872379 (+) 240 Protein_2661 hypothetical protein -
  MOW12_RS13800 (MOW12_13800) - 2872635..2874128 (-) 1494 WP_043907034.1 IS91 family transposase -
  MOW12_RS13805 (MOW12_13805) groL 2874353..2875993 (-) 1641 WP_004201176.1 chaperonin GroEL -
  MOW12_RS13810 (MOW12_13810) groES 2876049..2876339 (-) 291 WP_004201172.1 co-chaperone GroES -
  MOW12_RS13815 (MOW12_13815) cutA 2876533..2876862 (+) 330 WP_004201171.1 divalent-cation tolerance protein CutA -
  MOW12_RS13820 (MOW12_13820) - 2876867..2877898 (+) 1032 WP_004201169.1 protein-disulfide reductase DsbD domain-containing protein -
  MOW12_RS13825 (MOW12_13825) - 2877909..2878547 (-) 639 WP_004201168.1 phosphoribosylanthranilate isomerase -
  MOW12_RS13830 (MOW12_13830) ble 2878552..2878917 (-) 366 WP_004201167.1 bleomycin binding protein Ble-MBL -
  MOW12_RS13835 (MOW12_13835) - 2878921..2879733 (-) 813 WP_032492661.1 subclass B1 metallo-beta-lactamase NDM-3 -
  MOW12_RS13840 (MOW12_13840) - 2879834..2880802 (-) 969 WP_005804963.1 IS30 family transposase -
  MOW12_RS13845 (MOW12_13845) - 2880880..2882856 (+) 1977 WP_225876386.1 ATP-binding protein -
  MOW12_RS13850 (MOW12_13850) - 2882856..2884313 (+) 1458 WP_127799444.1 hypothetical protein -
  MOW12_RS13855 (MOW12_13855) - 2884451..2884867 (-) 417 WP_004909830.1 hypothetical protein -
  MOW12_RS13860 (MOW12_13860) - 2884869..2886995 (-) 2127 WP_127799442.1 integrase -
  MOW12_RS13865 (MOW12_13865) - 2886988..2888544 (-) 1557 WP_127799440.1 site-specific integrase -
  MOW12_RS13870 (MOW12_13870) - 2888537..2889760 (-) 1224 WP_127799438.1 site-specific integrase -
  MOW12_RS13875 (MOW12_13875) ssb 2889912..2890478 (-) 567 WP_075175360.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20670.41 Da        Isoelectric Point: 6.4819

>NTDB_id=668403 MOW12_RS13875 WP_075175360.1 2889912..2890478(-) (ssb) [Acinetobacter indicus strain BDT2076]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQSEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=668403 MOW12_RS13875 WP_075175360.1 2889912..2890478(-) (ssb) [Acinetobacter indicus strain BDT2076]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAAGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGTGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCTGCAGATTTGGATGATGACTTACC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0XYQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.577

100

0.543
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment