Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   MON37_RS08010 Genome accession   NZ_CP094242
Coordinates   1692282..1692581 (-) Length   99 a.a.
NCBI ID   WP_039410840.1    Uniprot ID   A0A0C1GVC1
Organism   Morococcus cerebrosus strain CIP 81.93     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1690907..1699621 1692282..1692581 within 0
IScluster/Tn 1690105..1691956 1692282..1692581 flank 326


Gene organization within MGE regions


Location: 1690105..1699621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON37_RS07995 (MON37_07995) - 1690105..1690868 (+) 764 Protein_1547 IS5 family transposase -
  MON37_RS08000 (MON37_08000) - 1690907..1691699 (+) 793 WP_234403659.1 IS5 family transposase -
  MON37_RS08005 (MON37_08005) - 1691705..1691956 (+) 252 Protein_1549 transposase -
  MON37_RS08010 (MON37_08010) comE 1692282..1692581 (-) 300 WP_039410840.1 helix-hairpin-helix domain-containing protein Machinery gene
  MON37_RS08040 (MON37_08040) thrB 1698704..1699621 (-) 918 WP_039410513.1 homoserine kinase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10300.08 Da        Isoelectric Point: 10.6262

>NTDB_id=668357 MON37_RS08010 WP_039410840.1 1692282..1692581(-) (comE) [Morococcus cerebrosus strain CIP 81.93]
MKKFLFAALSVLTASLSLAAVNINTASPSELEALPGIGPAKAKAIVDYRQQHGAFKSVEELKNVKGIGEGIFSKLKTEAT
VAPAPANPKAKNAVPLSKK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=668357 MON37_RS08010 WP_039410840.1 1692282..1692581(-) (comE) [Morococcus cerebrosus strain CIP 81.93]
ATGAAAAAATTCCTCTTTGCCGCACTCTCCGTTCTGACCGCCTCGCTGTCGCTGGCAGCCGTCAACATCAATACCGCTTC
CCCGTCCGAATTGGAAGCCCTGCCCGGCATCGGTCCGGCCAAAGCGAAAGCCATTGTGGACTACCGCCAGCAGCATGGTG
CCTTCAAATCAGTGGAAGAGCTCAAAAACGTTAAAGGCATCGGCGAGGGTATCTTCTCCAAACTGAAGACCGAAGCAACC
GTCGCTCCCGCACCTGCCAACCCAAAAGCTAAAAACGCCGTCCCATTATCTAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1GVC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.086

81.818

0.434
  comEA Vibrio parahaemolyticus RIMD 2210633

46.512

86.869

0.404

Multiple sequence alignment