Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MON37_RS05310 Genome accession   NZ_CP094242
Coordinates   1158812..1159327 (-) Length   171 a.a.
NCBI ID   WP_003742079.1    Uniprot ID   A0A0C1GZ09
Organism   Morococcus cerebrosus strain CIP 81.93     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1156944..1158646 1158812..1159327 flank 166


Gene organization within MGE regions


Location: 1156944..1159327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON37_RS05300 (MON37_05300) - 1157707..1158499 (+) 793 WP_242883556.1 IS5 family transposase -
  MON37_RS05305 (MON37_05305) - 1158506..1158646 (-) 141 Protein_1029 IS5/IS1182 family transposase -
  MON37_RS05310 (MON37_05310) ssb 1158812..1159327 (-) 516 WP_003742079.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19122.17 Da        Isoelectric Point: 5.3108

>NTDB_id=668346 MON37_RS05310 WP_003742079.1 1158812..1159327(-) (ssb) [Morococcus cerebrosus strain CIP 81.93]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRRLAEIAGQYLKKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGGRNDNSGGAPYDDGGYSQGGYQQQAPQQQYQAAPQNQEPPAAPRRQAPAAPAA
PVEDIDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=668346 MON37_RS05310 WP_003742079.1 1158812..1159327(-) (ssb) [Morococcus cerebrosus strain CIP 81.93]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGTCTCGGTCGCGACCCCGAAGTCCGCTATATGCCCAACGGCGAAGCCGT
CTGCAATTTCAGCGTCGCCACCAGCGAAACATGGAACGACCGCAACGGCCAGCGCGTGGAACGCACCGAGTGGCACAACA
TCACCATGTACCGCCGTCTTGCCGAAATCGCCGGACAATACCTGAAAAAAGGCAGCCAAGTTTATCTGGAAGGCCGCATC
CAAAGCCGTAAATACCAAGGCAAAGACGGCATCGAACGCACCGCATACGACATTATCGCCAATGAAATGAAAATGCTCGG
CGGCCGCAACGACAACAGCGGCGGCGCACCTTACGACGACGGCGGTTACAGCCAAGGCGGCTACCAACAACAAGCGCCGC
AACAACAGTACCAAGCCGCCCCGCAAAACCAAGAGCCTCCTGCCGCCCCACGCCGCCAAGCACCCGCCGCACCGGCAGCC
CCTGTCGAAGACATCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1GZ09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

84.659

100

0.871
  ssb Neisseria meningitidis MC58

83.429

100

0.854
  ssb Vibrio cholerae strain A1552

47.753

100

0.497
  ssb Glaesserella parasuis strain SC1401

45.604

100

0.485

Multiple sequence alignment